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Chlorine in PDB 1vch: Crystal Structure of A Phosphoribosyltransferase-Related Protein From Thermus Thermophilus

Enzymatic activity of Crystal Structure of A Phosphoribosyltransferase-Related Protein From Thermus Thermophilus

All present enzymatic activity of Crystal Structure of A Phosphoribosyltransferase-Related Protein From Thermus Thermophilus:
2.4.2.7;

Protein crystallography data

The structure of Crystal Structure of A Phosphoribosyltransferase-Related Protein From Thermus Thermophilus, PDB code: 1vch was solved by P.H.Rehse, T.H.Tahirov, Riken Structural Genomics/Proteomicsinitiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.98 / 1.94
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 167.419, 61.405, 102.389, 90.00, 93.97, 90.00
R / Rfree (%) 23.2 / 25.9

Other elements in 1vch:

The structure of Crystal Structure of A Phosphoribosyltransferase-Related Protein From Thermus Thermophilus also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Phosphoribosyltransferase-Related Protein From Thermus Thermophilus (pdb code 1vch). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of A Phosphoribosyltransferase-Related Protein From Thermus Thermophilus, PDB code: 1vch:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 1vch

Go back to Chlorine Binding Sites List in 1vch
Chlorine binding site 1 out of 5 in the Crystal Structure of A Phosphoribosyltransferase-Related Protein From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Phosphoribosyltransferase-Related Protein From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1001

b:68.3
occ:1.00
NH2 B:ARG86 2.8 67.1 1.0
N A:THR61 3.6 22.3 1.0
NH2 B:ARG82 3.6 33.2 1.0
CZ B:ARG86 3.8 70.1 1.0
NE B:ARG86 4.0 66.5 1.0
N A:SER62 4.0 29.0 1.0
OG A:SER62 4.0 38.4 1.0
O B:HOH2043 4.0 47.0 1.0
CB A:THR61 4.1 32.2 1.0
CA A:THR61 4.3 24.3 1.0
OG1 A:THR61 4.4 33.8 1.0
O A:GLU60 4.5 30.1 1.0
C A:GLU60 4.5 27.4 1.0
CB A:SER62 4.6 37.1 1.0
C A:THR61 4.7 24.5 1.0
CZ B:ARG82 4.7 44.8 1.0
O B:HOH2071 4.8 52.9 1.0
CA A:SER62 4.9 31.2 1.0
NH1 B:ARG86 4.9 70.6 1.0
O A:HOH2018 4.9 38.7 1.0
NH1 B:ARG82 5.0 35.2 1.0

Chlorine binding site 2 out of 5 in 1vch

Go back to Chlorine Binding Sites List in 1vch
Chlorine binding site 2 out of 5 in the Crystal Structure of A Phosphoribosyltransferase-Related Protein From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Phosphoribosyltransferase-Related Protein From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1002

b:56.9
occ:1.00
N B:THR61 3.2 23.6 1.0
N B:SER62 3.4 25.8 1.0
O B:HOH2013 3.5 34.8 1.0
OG B:SER62 3.9 36.5 1.0
CA B:THR61 4.0 25.1 1.0
CB B:SER62 4.0 30.8 1.0
O B:GLU60 4.0 23.8 1.0
CB B:THR61 4.0 26.7 1.0
C B:GLU60 4.0 24.1 1.0
NH1 A:ARG86 4.1 80.5 1.0
C B:THR61 4.2 26.6 1.0
NH2 A:ARG82 4.3 41.5 1.0
CA B:SER62 4.3 28.6 1.0
O B:HOH2008 4.4 31.8 1.0
OG1 B:THR61 4.5 27.2 1.0
O A:HOH2066 4.5 60.9 1.0
CD B:PRO63 4.6 21.9 1.0
NE B:ARG83 4.9 29.9 1.0
NH2 A:ARG86 4.9 78.5 1.0

Chlorine binding site 3 out of 5 in 1vch

Go back to Chlorine Binding Sites List in 1vch
Chlorine binding site 3 out of 5 in the Crystal Structure of A Phosphoribosyltransferase-Related Protein From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Phosphoribosyltransferase-Related Protein From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl1003

b:59.9
occ:1.00
N C:THR61 3.3 28.6 1.0
N C:SER62 3.6 30.0 1.0
NH1 D:ARG82 3.7 47.3 1.0
NH2 D:ARG82 3.8 57.7 1.0
OG C:SER62 3.8 52.3 1.0
NH1 D:ARG86 3.9 85.2 1.0
CB C:THR61 4.1 35.2 1.0
CA C:THR61 4.1 28.9 1.0
O C:GLU60 4.2 31.6 1.0
CB C:SER62 4.2 36.6 1.0
C C:GLU60 4.2 30.2 1.0
CZ D:ARG82 4.2 50.2 1.0
C C:THR61 4.4 33.0 1.0
OG1 C:THR61 4.6 39.2 1.0
CA C:SER62 4.6 33.5 1.0
CD D:ARG86 4.6 70.2 1.0
O C:HOH2028 4.6 40.5 1.0
NE C:ARG83 4.7 29.2 1.0
CD C:PRO63 4.9 25.0 1.0

Chlorine binding site 4 out of 5 in 1vch

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Chlorine binding site 4 out of 5 in the Crystal Structure of A Phosphoribosyltransferase-Related Protein From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of A Phosphoribosyltransferase-Related Protein From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl1004

b:50.9
occ:1.00
N D:THR61 3.3 24.7 1.0
NH2 C:ARG82 3.6 57.7 1.0
N D:SER62 3.6 28.6 1.0
OG D:SER62 3.7 34.3 1.0
O D:GLU60 4.1 27.1 1.0
NH1 C:ARG82 4.1 43.7 1.0
CA D:THR61 4.2 28.5 1.0
CB D:SER62 4.2 27.3 1.0
C D:GLU60 4.2 25.0 1.0
CB D:THR61 4.2 29.8 1.0
O D:HOH2023 4.2 40.0 1.0
CZ C:ARG82 4.3 41.9 1.0
C D:THR61 4.4 26.0 1.0
O D:HOH2013 4.5 33.7 1.0
OG1 D:THR61 4.5 34.7 1.0
CA D:SER62 4.6 30.1 1.0
CD D:PRO63 4.8 22.6 1.0
NE D:ARG83 4.8 29.7 1.0

Chlorine binding site 5 out of 5 in 1vch

Go back to Chlorine Binding Sites List in 1vch
Chlorine binding site 5 out of 5 in the Crystal Structure of A Phosphoribosyltransferase-Related Protein From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of A Phosphoribosyltransferase-Related Protein From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl1005

b:84.7
occ:1.00
N E:THR61 3.7 40.1 1.0
CB E:THR61 4.0 43.3 1.0
OG1 E:THR61 4.1 47.5 1.0
N E:SER62 4.2 54.0 1.0
OG E:SER62 4.3 64.5 1.0
CA E:THR61 4.4 43.5 1.0
O E:GLU60 4.6 48.2 1.0
C E:GLU60 4.6 46.1 1.0
C E:THR61 4.9 53.9 1.0
NE E:ARG83 4.9 68.3 1.0
CB E:SER62 4.9 57.4 1.0

Reference:

P.H.Rehse, T.H.Tahirov. Crystal Structure of A Phosphoribosyltransferase-Related Protein From Thermus Thermophilus To Be Published.
Page generated: Sat Dec 12 08:51:43 2020

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