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Chlorine in PDB 1vdx: Crystal Structure of A Pyrococcus Horikoshii Protein with Similarities to 2'5' Rna-Ligase

Enzymatic activity of Crystal Structure of A Pyrococcus Horikoshii Protein with Similarities to 2'5' Rna-Ligase

All present enzymatic activity of Crystal Structure of A Pyrococcus Horikoshii Protein with Similarities to 2'5' Rna-Ligase:
6.5.1.3;

Protein crystallography data

The structure of Crystal Structure of A Pyrococcus Horikoshii Protein with Similarities to 2'5' Rna-Ligase, PDB code: 1vdx was solved by P.H.Rehse, T.H.Tahirov, Riken Structural Genomics/Proteomicsinitiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.84 / 2.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.068, 45.471, 93.171, 90.00, 90.00, 90.00
R / Rfree (%) 22.5 / 27.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Pyrococcus Horikoshii Protein with Similarities to 2'5' Rna-Ligase (pdb code 1vdx). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of A Pyrococcus Horikoshii Protein with Similarities to 2'5' Rna-Ligase, PDB code: 1vdx:

Chlorine binding site 1 out of 1 in 1vdx

Go back to Chlorine Binding Sites List in 1vdx
Chlorine binding site 1 out of 1 in the Crystal Structure of A Pyrococcus Horikoshii Protein with Similarities to 2'5' Rna-Ligase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Pyrococcus Horikoshii Protein with Similarities to 2'5' Rna-Ligase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl185

b:52.1
occ:1.00
 NE A:ARG130 3.9 28.8 1.0
NH1 A:ARG88 4.1 48.3 1.0
NH2 A:ARG130 4.2 39.8 1.0
CG2 A:VAL89 4.2 33.5 1.0
NH2 A:ARG88 4.2 34.7 1.0
CZ A:ARG130 4.5 36.6 1.0
CZ A:ARG88 4.7 45.3 1.0
CD A:ARG130 4.9 37.4 1.0
CZ A:PHE45 5.0 44.6 1.0

Reference:

P.H.Rehse, T.H.Tahirov. Structure of A Putative 2'-5' Rna Ligase From Pyrococcus Horikoshii. Acta Crystallogr.,Sect.D V. 61 1207 2005.
ISSN: ISSN 0907-4449
PubMed: 16131753
DOI: 10.1107/S0907444905017841
Page generated: Sat Dec 12 08:51:45 2020

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