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Chlorine in PDB 1vft: Crystal Structure of L-Cycloserine-Bound Form of Alanine Racemase From D-Cycloserine-Producing Streptomyces Lavendulae

Enzymatic activity of Crystal Structure of L-Cycloserine-Bound Form of Alanine Racemase From D-Cycloserine-Producing Streptomyces Lavendulae

All present enzymatic activity of Crystal Structure of L-Cycloserine-Bound Form of Alanine Racemase From D-Cycloserine-Producing Streptomyces Lavendulae:
5.1.1.1;

Protein crystallography data

The structure of Crystal Structure of L-Cycloserine-Bound Form of Alanine Racemase From D-Cycloserine-Producing Streptomyces Lavendulae, PDB code: 1vft was solved by M.Noda, Y.Matoba, T.Kumagai, M.Sugiyama, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.30
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 83.770, 63.540, 85.320, 90.00, 118.02, 90.00
R / Rfree (%) 19.7 / 28.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of L-Cycloserine-Bound Form of Alanine Racemase From D-Cycloserine-Producing Streptomyces Lavendulae (pdb code 1vft). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of L-Cycloserine-Bound Form of Alanine Racemase From D-Cycloserine-Producing Streptomyces Lavendulae, PDB code: 1vft:

Chlorine binding site 1 out of 1 in 1vft

Go back to Chlorine Binding Sites List in 1vft
Chlorine binding site 1 out of 1 in the Crystal Structure of L-Cycloserine-Bound Form of Alanine Racemase From D-Cycloserine-Producing Streptomyces Lavendulae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of L-Cycloserine-Bound Form of Alanine Racemase From D-Cycloserine-Producing Streptomyces Lavendulae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl617

b:55.0
occ:1.00
N A:MET107 3.5 50.4 1.0
N A:TRP108 4.0 48.4 1.0
CB A:MET107 4.0 60.4 1.0
CD1 A:TRP108 4.1 45.3 1.0
CA A:MET107 4.2 52.5 1.0
C A:GLY106 4.4 50.5 1.0
CA A:GLY106 4.4 46.0 1.0
C A:MET107 4.6 51.2 1.0
CB A:TRP108 4.8 49.5 1.0
CG A:MET107 4.8 67.6 1.0
O B:HOH558 4.8 23.5 1.0
CG A:TRP108 4.9 48.2 1.0
CA A:TRP108 5.0 46.8 1.0

Reference:

M.Noda, Y.Matoba, T.Kumagai, M.Sugiyama. Structural Evidence That Alanine Racemase From A D-Cycloserine-Producing Microorganism Exhibits Resistance to Its Own Product. J.Biol.Chem. V. 279 46153 2004.
ISSN: ISSN 0021-9258
PubMed: 15302886
DOI: 10.1074/JBC.M404605200
Page generated: Sat Dec 12 08:51:47 2020

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