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Chlorine in PDB 1vjl: Crystal Structure of A DUF151 Family Protein (TM0160) From Thermotoga Maritima at 1.90 A Resolution

Protein crystallography data

The structure of Crystal Structure of A DUF151 Family Protein (TM0160) From Thermotoga Maritima at 1.90 A Resolution, PDB code: 1vjl was solved by Joint Center For Structural Genomics, Joint Center For Structuralgenomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.96 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 43.509, 51.061, 72.974, 90.00, 97.39, 90.00
R / Rfree (%) 19.8 / 25.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A DUF151 Family Protein (TM0160) From Thermotoga Maritima at 1.90 A Resolution (pdb code 1vjl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of A DUF151 Family Protein (TM0160) From Thermotoga Maritima at 1.90 A Resolution, PDB code: 1vjl:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 1vjl

Go back to Chlorine Binding Sites List in 1vjl
Chlorine binding site 1 out of 2 in the Crystal Structure of A DUF151 Family Protein (TM0160) From Thermotoga Maritima at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A DUF151 Family Protein (TM0160) From Thermotoga Maritima at 1.90 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:56.6
occ:1.00
OG A:SER114 2.9 45.7 1.0
CB A:SER114 3.3 44.8 1.0
O A:HOH409 3.3 44.3 1.0
O A:HOH402 3.4 37.0 1.0
N A:SER114 3.4 42.9 1.0
CB A:ARG112 3.6 42.9 1.0
CD A:PRO113 3.7 44.3 1.0
CA A:SER114 4.0 44.3 1.0
N A:PRO113 4.0 43.2 1.0
CG2 A:ILE35 4.0 45.5 1.0
CD A:ARG112 4.1 41.4 1.0
CG A:ARG112 4.2 41.5 1.0
C A:ARG112 4.5 43.2 1.0
CG A:PRO113 4.5 43.8 1.0
CB A:PRO113 4.5 43.2 1.0
C A:PRO113 4.5 44.1 1.0
CA A:ARG112 4.5 42.3 1.0
O A:HOH431 4.5 44.7 1.0
NH1 A:ARG112 4.5 41.9 1.0
CA A:PRO113 4.6 44.0 1.0
NE A:ARG112 4.6 38.0 1.0
CB A:ILE35 4.6 43.7 1.0
CZ A:ARG112 4.8 40.0 1.0
O A:TRP34 4.8 46.5 1.0
CA A:ILE35 4.9 44.3 1.0

Chlorine binding site 2 out of 2 in 1vjl

Go back to Chlorine Binding Sites List in 1vjl
Chlorine binding site 2 out of 2 in the Crystal Structure of A DUF151 Family Protein (TM0160) From Thermotoga Maritima at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A DUF151 Family Protein (TM0160) From Thermotoga Maritima at 1.90 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl302

b:53.0
occ:1.00
OG B:SER114 2.8 40.9 1.0
CB B:SER114 3.2 42.5 1.0
O B:HOH415 3.2 35.0 1.0
N B:SER114 3.3 41.9 1.0
CB B:ARG112 3.5 39.3 1.0
CD B:PRO113 3.5 40.1 1.0
O B:HOH424 3.6 42.2 1.0
CG B:PRO113 3.6 41.9 1.0
CA B:SER114 3.8 42.1 1.0
N B:PRO113 4.0 40.4 1.0
CD B:ARG112 4.0 39.6 1.0
CG2 B:ILE35 4.2 40.6 1.0
CG B:ARG112 4.2 39.0 1.0
NH1 B:ARG112 4.3 45.6 1.0
C B:PRO113 4.3 41.8 1.0
C B:ARG112 4.4 39.9 1.0
NE B:ARG112 4.5 40.6 1.0
CA B:ARG112 4.5 39.1 1.0
CA B:PRO113 4.6 41.2 1.0
O B:HOH417 4.6 50.4 1.0
CZ B:ARG112 4.6 41.4 1.0
CB B:PRO113 4.6 41.8 1.0
CB B:ILE35 4.6 41.1 1.0
O B:TRP34 4.9 39.9 1.0
CA B:ILE35 4.9 40.8 1.0

Reference:

G.Spraggon, D.Pantazatos, H.E.Klock, I.A.Wilson, V.L.Woods, S.A.Lesley. On the Use of Dxms to Produce More Crystallizable Proteins: Structures of the T. Maritima Proteins TM0160 and TM1171. Protein Sci. V. 13 3187 2004.
ISSN: ISSN 0961-8368
PubMed: 15557262
DOI: 10.1110/PS.04939904
Page generated: Sat Jul 20 03:04:00 2024

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