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Chlorine in PDB 1vkh: Crystal Structure of A Putative Serine Hydrolase (YDR428C) From Saccharomyces Cerevisiae at 1.85 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative Serine Hydrolase (YDR428C) From Saccharomyces Cerevisiae at 1.85 A Resolution, PDB code: 1vkh was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.44 / 1.85
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 41.967, 85.959, 70.479, 90.00, 97.71, 90.00
R / Rfree (%) 14.3 / 18.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Putative Serine Hydrolase (YDR428C) From Saccharomyces Cerevisiae at 1.85 A Resolution (pdb code 1vkh). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of A Putative Serine Hydrolase (YDR428C) From Saccharomyces Cerevisiae at 1.85 A Resolution, PDB code: 1vkh:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 1vkh

Go back to Chlorine Binding Sites List in 1vkh
Chlorine binding site 1 out of 2 in the Crystal Structure of A Putative Serine Hydrolase (YDR428C) From Saccharomyces Cerevisiae at 1.85 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Putative Serine Hydrolase (YDR428C) From Saccharomyces Cerevisiae at 1.85 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl455

b:19.1
occ:0.70
CL B:CL455 0.0 19.1 0.7
CL B:CL455 1.5 21.4 0.3
N B:ALA133 3.2 24.4 1.0
N B:GLU132 3.3 24.8 1.0
O B:HOH547 3.4 29.4 1.0
CB B:SER131 3.5 21.9 1.0
O B:HOH530 3.7 27.4 1.0
OG B:SER131 3.7 22.7 1.0
CB B:GLU132 3.7 25.3 1.0
CA B:GLU132 3.8 25.3 1.0
C B:GLU132 4.0 25.2 1.0
CB B:ALA133 4.0 26.0 1.0
C B:SER131 4.2 23.8 1.0
CA B:ALA133 4.2 24.4 1.0
CA B:SER131 4.4 23.5 1.0
O B:HOH509 4.8 18.0 1.0
O B:HOH504 4.9 15.6 1.0

Chlorine binding site 2 out of 2 in 1vkh

Go back to Chlorine Binding Sites List in 1vkh
Chlorine binding site 2 out of 2 in the Crystal Structure of A Putative Serine Hydrolase (YDR428C) From Saccharomyces Cerevisiae at 1.85 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Putative Serine Hydrolase (YDR428C) From Saccharomyces Cerevisiae at 1.85 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl455

b:21.4
occ:0.30
CL B:CL455 0.0 21.4 0.3
CL B:CL455 1.5 19.1 0.7
O B:HOH547 3.0 29.4 1.0
N B:GLU132 3.0 24.8 1.0
CB B:SER131 3.5 21.9 1.0
CB B:GLU132 3.6 25.3 1.0
CA B:GLU132 3.8 25.3 1.0
C B:SER131 4.0 23.8 1.0
CA B:SER131 4.0 23.5 1.0
N B:ALA133 4.1 24.4 1.0
OG B:SER131 4.1 22.7 1.0
O B:HOH530 4.2 27.4 1.0
O B:HOH504 4.3 15.6 1.0
C B:GLU132 4.5 25.2 1.0
O B:HOH583 4.8 31.1 1.0

Reference:

J.W.Arndt, R.Schwarzenbacher, R.Page, P.Abdubek, E.Ambing, T.Biorac, J.M.Canaves, H.J.Chiu, X.Dai, A.M.Deacon, M.Didonato, M.A.Elsliger, A.Godzik, C.Grittini, S.K.Grzechnik, J.Hale, E.Hampton, G.W.Han, J.Haugen, M.Hornsby, H.E.Klock, E.Koesema, A.Kreusch, P.Kuhn, L.Jaroszewski, S.A.Lesley, I.Levin, D.Mcmullan, T.M.Mcphillips, M.D.Miller, A.Morse, K.Moy, E.Nigoghossian, J.Ouyang, W.S.Peti, K.Quijano, R.Reyes, E.Sims, G.Spraggon, R.C.Stevens, H.Van Den Bedem, J.Velasquez, J.Vincent, F.Von Delft, X.Wang, B.West, A.White, G.Wolf, Q.Xu, O.Zagnitko, K.O.Hodgson, J.Wooley, I.A.Wilson. Crystal Structure of An Alpha/Beta Serine Hydrolase (YDR428C) From Saccharomyces Cerevisiae at 1.85 A Resolution Proteins V. 58 755 2005.
ISSN: ISSN 0887-3585
PubMed: 15624212
DOI: 10.1002/PROT.20336
Page generated: Sat Dec 12 08:51:53 2020

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