Atomistry » Chlorine » PDB 1v8o-1vq4 » 1vlp
Atomistry »
  Chlorine »
    PDB 1v8o-1vq4 »
      1vlp »

Chlorine in PDB 1vlp: Crystal Structure of A Putative Nicotinate Phosphoribosyltransferase (YOR209C, NPT1) From Saccharomyces Cerevisiae at 1.75 A Resolution

Enzymatic activity of Crystal Structure of A Putative Nicotinate Phosphoribosyltransferase (YOR209C, NPT1) From Saccharomyces Cerevisiae at 1.75 A Resolution

All present enzymatic activity of Crystal Structure of A Putative Nicotinate Phosphoribosyltransferase (YOR209C, NPT1) From Saccharomyces Cerevisiae at 1.75 A Resolution:
2.4.2.11;

Protein crystallography data

The structure of Crystal Structure of A Putative Nicotinate Phosphoribosyltransferase (YOR209C, NPT1) From Saccharomyces Cerevisiae at 1.75 A Resolution, PDB code: 1vlp was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.24 / 1.75
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 54.406, 83.103, 107.237, 97.35, 95.67, 97.99
R / Rfree (%) 17 / 21

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Putative Nicotinate Phosphoribosyltransferase (YOR209C, NPT1) From Saccharomyces Cerevisiae at 1.75 A Resolution (pdb code 1vlp). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of A Putative Nicotinate Phosphoribosyltransferase (YOR209C, NPT1) From Saccharomyces Cerevisiae at 1.75 A Resolution, PDB code: 1vlp:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 1vlp

Go back to Chlorine Binding Sites List in 1vlp
Chlorine binding site 1 out of 3 in the Crystal Structure of A Putative Nicotinate Phosphoribosyltransferase (YOR209C, NPT1) From Saccharomyces Cerevisiae at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Putative Nicotinate Phosphoribosyltransferase (YOR209C, NPT1) From Saccharomyces Cerevisiae at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl501

b:3.4
occ:1.00
 O A:HOH633 3.0 11.0 1.0
OH A:TYR36 3.1 3.7 1.0
O A:HOH543 3.2 8.2 1.0
N A:LEU117 3.2 4.2 1.0
ND2 A:ASN38 3.4 4.0 1.0
CE2 A:TYR36 3.6 3.4 1.0
CB A:ASN38 3.7 4.8 1.0
CE1 A:PHE45 3.8 3.8 1.0
CA A:LYS116 3.8 9.8 1.0
CZ A:TYR36 3.8 3.4 1.0
CD1 A:PHE45 3.8 7.5 1.0
CG A:LEU117 3.9 5.5 1.0
CG A:ASN38 4.0 6.0 1.0
CB A:LEU117 4.0 4.7 1.0
C A:LYS116 4.1 6.9 1.0
CB A:LYS116 4.1 10.2 1.0
CA A:LEU117 4.1 5.7 1.0
O A:LEU117 4.3 8.5 1.0
O A:HOH661 4.6 18.4 1.0
CD1 A:LEU117 4.7 5.6 1.0
O A:LEU43 4.7 6.6 1.0
C A:LEU117 4.7 6.7 1.0
O A:TYR115 4.7 4.0 1.0
CD2 A:LEU117 4.9 11.2 1.0
CD2 A:TYR36 5.0 2.0 1.0

Chlorine binding site 2 out of 3 in 1vlp

Go back to Chlorine Binding Sites List in 1vlp
Chlorine binding site 2 out of 3 in the Crystal Structure of A Putative Nicotinate Phosphoribosyltransferase (YOR209C, NPT1) From Saccharomyces Cerevisiae at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Putative Nicotinate Phosphoribosyltransferase (YOR209C, NPT1) From Saccharomyces Cerevisiae at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl501

b:2.0
occ:1.00
 O B:HOH654 3.0 13.0 1.0
O B:HOH524 3.1 3.3 1.0
OH B:TYR36 3.1 4.2 1.0
N B:LEU117 3.3 2.0 1.0
ND2 B:ASN38 3.4 7.0 1.0
CB B:ASN38 3.7 2.6 1.0
CE2 B:TYR36 3.7 2.0 1.0
CA B:LYS116 3.8 3.5 1.0
CE1 B:PHE45 3.9 2.0 1.0
CD1 B:PHE45 3.9 3.3 1.0
CZ B:TYR36 3.9 2.0 1.0
CG B:LEU117 4.0 3.9 1.0
CG B:ASN38 4.0 3.5 1.0
C B:LYS116 4.1 4.8 1.0
CB B:LYS116 4.1 5.5 1.0
CB B:LEU117 4.2 2.0 1.0
CA B:LEU117 4.3 2.0 1.0
O B:LEU117 4.3 2.0 1.0
O B:TYR115 4.6 4.2 1.0
O B:LEU43 4.6 6.0 1.0
CD1 B:LEU117 4.8 2.0 1.0
C B:LEU117 4.8 2.3 1.0

Chlorine binding site 3 out of 3 in 1vlp

Go back to Chlorine Binding Sites List in 1vlp
Chlorine binding site 3 out of 3 in the Crystal Structure of A Putative Nicotinate Phosphoribosyltransferase (YOR209C, NPT1) From Saccharomyces Cerevisiae at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Putative Nicotinate Phosphoribosyltransferase (YOR209C, NPT1) From Saccharomyces Cerevisiae at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl501

b:2.0
occ:1.00
 OH C:TYR36 3.0 5.0 1.0
O C:HOH694 3.1 17.1 1.0
O C:HOH534 3.1 3.8 1.0
N C:LEU117 3.2 3.8 1.0
ND2 C:ASN38 3.3 4.0 1.0
CB C:ASN38 3.7 5.2 1.0
CE2 C:TYR36 3.7 2.6 1.0
CE1 C:PHE45 3.8 6.5 1.0
CA C:LYS116 3.8 5.6 1.0
CZ C:TYR36 3.8 2.0 1.0
CD1 C:PHE45 3.8 7.3 1.0
CB C:LEU117 4.0 2.7 1.0
CG C:LEU117 4.0 8.4 1.0
C C:LYS116 4.0 5.6 1.0
CG C:ASN38 4.0 5.2 1.0
CA C:LEU117 4.1 3.8 1.0
CB C:LYS116 4.2 6.5 1.0
O C:LEU117 4.2 4.1 1.0
C C:LEU117 4.6 5.1 1.0
O C:TYR115 4.7 2.8 1.0
CD1 C:LEU117 4.7 7.2 1.0
O C:LEU43 4.7 7.8 1.0

Reference:

J.S.Chappie, J.M.Canaves, G.W.Han, C.L.Rife, Q.Xu, R.C.Stevens. The Structure of A Eukaryotic Nicotinic Acid Phosphoribosyltransferase Reveals Structural Heterogeneity Among Type II Prtases. Structure V. 13 1385 2005.
ISSN: ISSN 0969-2126
PubMed: 16154095
DOI: 10.1016/J.STR.2005.05.016
Page generated: Sat Jul 20 03:05:27 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy