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Chlorine in PDB 1vlp: Crystal Structure of A Putative Nicotinate Phosphoribosyltransferase (YOR209C, NPT1) From Saccharomyces Cerevisiae at 1.75 A Resolution

Enzymatic activity of Crystal Structure of A Putative Nicotinate Phosphoribosyltransferase (YOR209C, NPT1) From Saccharomyces Cerevisiae at 1.75 A Resolution

All present enzymatic activity of Crystal Structure of A Putative Nicotinate Phosphoribosyltransferase (YOR209C, NPT1) From Saccharomyces Cerevisiae at 1.75 A Resolution:
2.4.2.11;

Protein crystallography data

The structure of Crystal Structure of A Putative Nicotinate Phosphoribosyltransferase (YOR209C, NPT1) From Saccharomyces Cerevisiae at 1.75 A Resolution, PDB code: 1vlp was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.24 / 1.75
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 54.406, 83.103, 107.237, 97.35, 95.67, 97.99
R / Rfree (%) 17 / 21

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Putative Nicotinate Phosphoribosyltransferase (YOR209C, NPT1) From Saccharomyces Cerevisiae at 1.75 A Resolution (pdb code 1vlp). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of A Putative Nicotinate Phosphoribosyltransferase (YOR209C, NPT1) From Saccharomyces Cerevisiae at 1.75 A Resolution, PDB code: 1vlp:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 1vlp

Go back to Chlorine Binding Sites List in 1vlp
Chlorine binding site 1 out of 3 in the Crystal Structure of A Putative Nicotinate Phosphoribosyltransferase (YOR209C, NPT1) From Saccharomyces Cerevisiae at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Putative Nicotinate Phosphoribosyltransferase (YOR209C, NPT1) From Saccharomyces Cerevisiae at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl501

b:3.4
occ:1.00
 O A:HOH633 3.0 11.0 1.0
OH A:TYR36 3.1 3.7 1.0
O A:HOH543 3.2 8.2 1.0
N A:LEU117 3.2 4.2 1.0
ND2 A:ASN38 3.4 4.0 1.0
CE2 A:TYR36 3.6 3.4 1.0
CB A:ASN38 3.7 4.8 1.0
CE1 A:PHE45 3.8 3.8 1.0
CA A:LYS116 3.8 9.8 1.0
CZ A:TYR36 3.8 3.4 1.0
CD1 A:PHE45 3.8 7.5 1.0
CG A:LEU117 3.9 5.5 1.0
CG A:ASN38 4.0 6.0 1.0
CB A:LEU117 4.0 4.7 1.0
C A:LYS116 4.1 6.9 1.0
CB A:LYS116 4.1 10.2 1.0
CA A:LEU117 4.1 5.7 1.0
O A:LEU117 4.3 8.5 1.0
O A:HOH661 4.6 18.4 1.0
CD1 A:LEU117 4.7 5.6 1.0
O A:LEU43 4.7 6.6 1.0
C A:LEU117 4.7 6.7 1.0
O A:TYR115 4.7 4.0 1.0
CD2 A:LEU117 4.9 11.2 1.0
CD2 A:TYR36 5.0 2.0 1.0

Chlorine binding site 2 out of 3 in 1vlp

Go back to Chlorine Binding Sites List in 1vlp
Chlorine binding site 2 out of 3 in the Crystal Structure of A Putative Nicotinate Phosphoribosyltransferase (YOR209C, NPT1) From Saccharomyces Cerevisiae at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Putative Nicotinate Phosphoribosyltransferase (YOR209C, NPT1) From Saccharomyces Cerevisiae at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl501

b:2.0
occ:1.00
 O B:HOH654 3.0 13.0 1.0
O B:HOH524 3.1 3.3 1.0
OH B:TYR36 3.1 4.2 1.0
N B:LEU117 3.3 2.0 1.0
ND2 B:ASN38 3.4 7.0 1.0
CB B:ASN38 3.7 2.6 1.0
CE2 B:TYR36 3.7 2.0 1.0
CA B:LYS116 3.8 3.5 1.0
CE1 B:PHE45 3.9 2.0 1.0
CD1 B:PHE45 3.9 3.3 1.0
CZ B:TYR36 3.9 2.0 1.0
CG B:LEU117 4.0 3.9 1.0
CG B:ASN38 4.0 3.5 1.0
C B:LYS116 4.1 4.8 1.0
CB B:LYS116 4.1 5.5 1.0
CB B:LEU117 4.2 2.0 1.0
CA B:LEU117 4.3 2.0 1.0
O B:LEU117 4.3 2.0 1.0
O B:TYR115 4.6 4.2 1.0
O B:LEU43 4.6 6.0 1.0
CD1 B:LEU117 4.8 2.0 1.0
C B:LEU117 4.8 2.3 1.0

Chlorine binding site 3 out of 3 in 1vlp

Go back to Chlorine Binding Sites List in 1vlp
Chlorine binding site 3 out of 3 in the Crystal Structure of A Putative Nicotinate Phosphoribosyltransferase (YOR209C, NPT1) From Saccharomyces Cerevisiae at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Putative Nicotinate Phosphoribosyltransferase (YOR209C, NPT1) From Saccharomyces Cerevisiae at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl501

b:2.0
occ:1.00
 OH C:TYR36 3.0 5.0 1.0
O C:HOH694 3.1 17.1 1.0
O C:HOH534 3.1 3.8 1.0
N C:LEU117 3.2 3.8 1.0
ND2 C:ASN38 3.3 4.0 1.0
CB C:ASN38 3.7 5.2 1.0
CE2 C:TYR36 3.7 2.6 1.0
CE1 C:PHE45 3.8 6.5 1.0
CA C:LYS116 3.8 5.6 1.0
CZ C:TYR36 3.8 2.0 1.0
CD1 C:PHE45 3.8 7.3 1.0
CB C:LEU117 4.0 2.7 1.0
CG C:LEU117 4.0 8.4 1.0
C C:LYS116 4.0 5.6 1.0
CG C:ASN38 4.0 5.2 1.0
CA C:LEU117 4.1 3.8 1.0
CB C:LYS116 4.2 6.5 1.0
O C:LEU117 4.2 4.1 1.0
C C:LEU117 4.6 5.1 1.0
O C:TYR115 4.7 2.8 1.0
CD1 C:LEU117 4.7 7.2 1.0
O C:LEU43 4.7 7.8 1.0

Reference:

J.S.Chappie, J.M.Canaves, G.W.Han, C.L.Rife, Q.Xu, R.C.Stevens. The Structure of A Eukaryotic Nicotinic Acid Phosphoribosyltransferase Reveals Structural Heterogeneity Among Type II Prtases. Structure V. 13 1385 2005.
ISSN: ISSN 0969-2126
PubMed: 16154095
DOI: 10.1016/J.STR.2005.05.016
Page generated: Sat Dec 12 08:51:58 2020

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