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Chlorine in PDB 1vm8: Crystal Structure of Udp-N-Acetylglucosamine Pyrophosphorylase (AGX2) From Mus Musculus at 2.50 A Resolution

Enzymatic activity of Crystal Structure of Udp-N-Acetylglucosamine Pyrophosphorylase (AGX2) From Mus Musculus at 2.50 A Resolution

All present enzymatic activity of Crystal Structure of Udp-N-Acetylglucosamine Pyrophosphorylase (AGX2) From Mus Musculus at 2.50 A Resolution:
2.7.7.23;

Protein crystallography data

The structure of Crystal Structure of Udp-N-Acetylglucosamine Pyrophosphorylase (AGX2) From Mus Musculus at 2.50 A Resolution, PDB code: 1vm8 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.11 / 2.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 80.094, 73.402, 107.132, 90.00, 99.83, 90.00
R / Rfree (%) 20.7 / 26.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Udp-N-Acetylglucosamine Pyrophosphorylase (AGX2) From Mus Musculus at 2.50 A Resolution (pdb code 1vm8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of Udp-N-Acetylglucosamine Pyrophosphorylase (AGX2) From Mus Musculus at 2.50 A Resolution, PDB code: 1vm8:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 1vm8

Go back to Chlorine Binding Sites List in 1vm8
Chlorine binding site 1 out of 5 in the Crystal Structure of Udp-N-Acetylglucosamine Pyrophosphorylase (AGX2) From Mus Musculus at 2.50 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Udp-N-Acetylglucosamine Pyrophosphorylase (AGX2) From Mus Musculus at 2.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl523

b:63.0
occ:1.00
 NH1 A:ARG9 2.8 55.0 1.0
O A:PHE42 3.0 47.6 1.0
N A:PHE42 3.6 47.1 1.0
C A:PHE42 3.7 46.8 1.0
CB A:PHE42 3.7 46.0 1.0
CA A:PHE42 3.9 46.6 1.0
OD1 A:ASN41 3.9 65.3 1.0
CG A:ARG9 3.9 51.2 1.0
CZ A:ARG9 4.0 55.0 1.0
CD2 A:PHE42 4.0 44.3 1.0
CG A:PHE42 4.3 45.0 1.0
C A:ASN41 4.4 48.1 1.0
CD A:ARG9 4.5 50.5 1.0
CA A:ASN41 4.6 49.9 1.0
NE A:ARG9 4.6 51.1 1.0
O A:MSE40 4.7 51.7 1.0
N A:GLU43 4.7 45.9 1.0
CB A:GLU43 4.7 44.8 1.0
NH2 A:ARG9 4.8 56.7 1.0
CG A:ASN41 5.0 57.3 1.0

Chlorine binding site 2 out of 5 in 1vm8

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Chlorine binding site 2 out of 5 in the Crystal Structure of Udp-N-Acetylglucosamine Pyrophosphorylase (AGX2) From Mus Musculus at 2.50 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Udp-N-Acetylglucosamine Pyrophosphorylase (AGX2) From Mus Musculus at 2.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl523

b:37.1
occ:1.00
 ND2 B:ASN41 2.7 64.2 1.0
N B:PHE42 3.5 45.6 1.0
NE B:ARG9 3.6 52.4 1.0
NH2 B:ARG9 3.8 54.5 1.0
CG B:ASN41 3.9 57.9 1.0
N B:GLU43 3.9 43.6 1.0
CZ B:ARG9 4.2 54.5 1.0
CB B:PHE42 4.3 45.2 1.0
CA B:ASN41 4.3 48.6 1.0
C B:ASN41 4.3 45.5 1.0
CA B:PHE42 4.3 45.7 1.0
CD2 B:PHE42 4.4 40.6 1.0
CB B:GLU43 4.5 43.2 1.0
CG B:ARG9 4.6 50.5 1.0
CD B:ARG9 4.6 49.8 1.0
C B:PHE42 4.6 45.0 1.0
CB B:ARG9 4.7 49.3 1.0
OD1 B:ASN41 4.7 65.7 1.0
CB B:ASN41 4.7 49.6 1.0
CG B:PHE42 4.8 43.2 1.0
CA B:GLU43 4.9 43.3 1.0
O B:MSE40 4.9 46.1 1.0

Chlorine binding site 3 out of 5 in 1vm8

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Chlorine binding site 3 out of 5 in the Crystal Structure of Udp-N-Acetylglucosamine Pyrophosphorylase (AGX2) From Mus Musculus at 2.50 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Udp-N-Acetylglucosamine Pyrophosphorylase (AGX2) From Mus Musculus at 2.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl524

b:42.2
occ:1.00
 NH1 B:ARG422 3.0 50.7 1.0
NE2 B:HIS423 3.6 49.9 1.0
CZ B:ARG422 4.2 39.6 1.0
CG B:PRO478 4.3 66.2 1.0
CE1 B:HIS423 4.4 49.6 1.0
CD2 B:HIS423 4.5 46.2 1.0
NH2 B:ARG422 4.7 35.5 1.0
CD B:PRO478 4.7 65.1 1.0

Chlorine binding site 4 out of 5 in 1vm8

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Chlorine binding site 4 out of 5 in the Crystal Structure of Udp-N-Acetylglucosamine Pyrophosphorylase (AGX2) From Mus Musculus at 2.50 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Udp-N-Acetylglucosamine Pyrophosphorylase (AGX2) From Mus Musculus at 2.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl525

b:39.2
occ:1.00
 NZ B:LYS180 2.6 55.8 1.0
CE1 B:PHE177 3.9 34.9 1.0
NE2 B:HIS181 3.9 41.0 1.0
CE B:LYS180 4.0 51.0 1.0
CD1 B:PHE177 4.0 40.1 1.0
CE1 B:HIS181 4.5 39.5 1.0

Chlorine binding site 5 out of 5 in 1vm8

Go back to Chlorine Binding Sites List in 1vm8
Chlorine binding site 5 out of 5 in the Crystal Structure of Udp-N-Acetylglucosamine Pyrophosphorylase (AGX2) From Mus Musculus at 2.50 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Udp-N-Acetylglucosamine Pyrophosphorylase (AGX2) From Mus Musculus at 2.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl526

b:45.6
occ:1.00
 O B:HOH552 3.0 30.9 1.0
N B:GLU502 3.5 44.5 1.0
CA B:LYS501 3.9 44.2 1.0
CB B:LYS501 4.2 43.8 1.0
C B:LYS501 4.2 46.4 1.0
O B:GLU502 4.3 45.1 1.0
CA B:GLU502 4.5 44.6 1.0
CG B:LYS501 4.5 43.9 1.0
CB B:GLU502 4.6 43.0 1.0
CG B:GLU502 4.6 48.3 1.0
O B:ASP500 4.8 42.0 1.0
C B:GLU502 4.9 44.1 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Jul 20 03:05:58 2024

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