Chlorine in PDB 1vme: Crystal Structure of Flavoprotein (TM0755) From Thermotoga Maritima at 1.80 A Resolution
Protein crystallography data
The structure of Crystal Structure of Flavoprotein (TM0755) From Thermotoga Maritima at 1.80 A Resolution, PDB code: 1vme
was solved by
Joint Center For Structural Genomics (Jcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.92 /
1.80
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
55.242,
95.831,
90.130,
90.00,
95.43,
90.00
|
R / Rfree (%)
|
14.7 /
18.1
|
Other elements in 1vme:
The structure of Crystal Structure of Flavoprotein (TM0755) From Thermotoga Maritima at 1.80 A Resolution also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Flavoprotein (TM0755) From Thermotoga Maritima at 1.80 A Resolution
(pdb code 1vme). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the
Crystal Structure of Flavoprotein (TM0755) From Thermotoga Maritima at 1.80 A Resolution, PDB code: 1vme:
Jump to Chlorine binding site number:
1;
2;
3;
Chlorine binding site 1 out
of 3 in 1vme
Go back to
Chlorine Binding Sites List in 1vme
Chlorine binding site 1 out
of 3 in the Crystal Structure of Flavoprotein (TM0755) From Thermotoga Maritima at 1.80 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Flavoprotein (TM0755) From Thermotoga Maritima at 1.80 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl399
b:21.0
occ:1.00
|
NE
|
A:ARG327
|
3.2
|
24.9
|
1.0
|
NE
|
B:ARG327
|
3.3
|
26.1
|
1.0
|
NH2
|
A:ARG327
|
3.3
|
24.7
|
1.0
|
NH2
|
B:ARG327
|
3.3
|
24.5
|
1.0
|
CD1
|
B:PHE328
|
3.7
|
20.1
|
1.0
|
CZ
|
A:ARG327
|
3.7
|
23.1
|
1.0
|
CA
|
B:PHE328
|
3.7
|
22.0
|
1.0
|
CZ
|
B:ARG327
|
3.8
|
25.2
|
1.0
|
CD1
|
A:PHE328
|
3.8
|
22.1
|
1.0
|
CA
|
A:PHE328
|
3.8
|
21.2
|
1.0
|
CB
|
B:PHE328
|
3.9
|
24.4
|
1.0
|
CD1
|
A:LEU331
|
3.9
|
20.0
|
1.0
|
CD1
|
B:LEU331
|
4.0
|
21.8
|
1.0
|
CB
|
A:PHE328
|
4.0
|
22.4
|
1.0
|
N
|
B:PHE328
|
4.2
|
23.1
|
1.0
|
N
|
A:PHE328
|
4.2
|
19.2
|
1.0
|
CG
|
B:PHE328
|
4.3
|
22.4
|
1.0
|
CD
|
A:ARG327
|
4.3
|
23.4
|
1.0
|
CG
|
A:PHE328
|
4.4
|
22.8
|
1.0
|
CD
|
B:ARG327
|
4.4
|
26.4
|
1.0
|
CG
|
A:ARG327
|
4.6
|
22.4
|
1.0
|
CG
|
B:ARG327
|
4.6
|
25.9
|
1.0
|
C
|
A:ARG327
|
4.7
|
23.0
|
1.0
|
CE1
|
B:PHE328
|
4.7
|
25.6
|
1.0
|
C
|
B:ARG327
|
4.7
|
25.1
|
1.0
|
CE1
|
A:PHE328
|
4.8
|
26.7
|
1.0
|
O
|
A:ARG327
|
4.9
|
21.0
|
1.0
|
O
|
B:ARG327
|
5.0
|
22.2
|
1.0
|
|
Chlorine binding site 2 out
of 3 in 1vme
Go back to
Chlorine Binding Sites List in 1vme
Chlorine binding site 2 out
of 3 in the Crystal Structure of Flavoprotein (TM0755) From Thermotoga Maritima at 1.80 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Flavoprotein (TM0755) From Thermotoga Maritima at 1.80 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl400
b:26.8
occ:1.00
|
OH
|
A:TYR318
|
3.1
|
20.4
|
0.5
|
N
|
A:TYR264
|
3.2
|
29.3
|
1.0
|
N
|
A:PHE266
|
3.4
|
22.5
|
1.0
|
N
|
A:VAL267
|
3.4
|
19.4
|
1.0
|
N
|
A:GLY265
|
3.5
|
26.1
|
1.0
|
N
|
A:MSE263
|
3.5
|
32.2
|
1.0
|
CG2
|
A:VAL267
|
3.7
|
20.4
|
1.0
|
CB
|
A:PHE266
|
3.8
|
20.2
|
1.0
|
OG
|
A:SER262
|
3.8
|
26.2
|
1.0
|
CA
|
A:PHE266
|
3.9
|
22.2
|
1.0
|
CA
|
A:TYR264
|
3.9
|
27.4
|
1.0
|
OG
|
A:SER316
|
4.0
|
26.1
|
0.5
|
C
|
A:TYR264
|
4.0
|
29.1
|
1.0
|
CZ
|
A:TYR318
|
4.0
|
16.5
|
0.5
|
CE2
|
A:TYR318
|
4.1
|
19.3
|
0.5
|
CB
|
A:TYR264
|
4.1
|
29.3
|
1.0
|
CA
|
A:SER262
|
4.1
|
24.3
|
1.0
|
C
|
A:SER262
|
4.2
|
26.8
|
1.0
|
C
|
A:PHE266
|
4.2
|
19.9
|
1.0
|
C
|
A:MSE263
|
4.2
|
35.3
|
1.0
|
CD2
|
A:TYR264
|
4.2
|
36.1
|
1.0
|
CB
|
A:VAL267
|
4.2
|
17.6
|
1.0
|
CA
|
A:MSE263
|
4.2
|
38.9
|
1.0
|
C
|
A:GLY265
|
4.3
|
27.3
|
1.0
|
OG
|
A:SER316
|
4.3
|
31.0
|
0.5
|
CD2
|
A:PHE266
|
4.3
|
26.8
|
1.0
|
CA
|
A:VAL267
|
4.4
|
17.1
|
1.0
|
CB
|
A:MSE263
|
4.4
|
38.2
|
1.0
|
CA
|
A:GLY265
|
4.4
|
26.8
|
1.0
|
CG
|
A:TYR264
|
4.5
|
27.5
|
1.0
|
CG
|
A:PHE266
|
4.6
|
22.2
|
1.0
|
CB
|
A:SER262
|
4.6
|
23.7
|
1.0
|
CB
|
A:SER316
|
5.0
|
23.1
|
0.5
|
|
Chlorine binding site 3 out
of 3 in 1vme
Go back to
Chlorine Binding Sites List in 1vme
Chlorine binding site 3 out
of 3 in the Crystal Structure of Flavoprotein (TM0755) From Thermotoga Maritima at 1.80 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Flavoprotein (TM0755) From Thermotoga Maritima at 1.80 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl399
b:26.6
occ:1.00
|
N
|
B:TYR264
|
3.2
|
29.3
|
1.0
|
OH
|
B:TYR318
|
3.3
|
25.5
|
0.5
|
N
|
B:PHE266
|
3.4
|
23.6
|
1.0
|
N
|
B:MSE263
|
3.4
|
31.9
|
1.0
|
N
|
B:VAL267
|
3.5
|
20.9
|
1.0
|
N
|
B:GLY265
|
3.6
|
27.2
|
1.0
|
OG
|
B:SER262
|
3.8
|
24.8
|
1.0
|
CB
|
B:PHE266
|
3.8
|
23.6
|
1.0
|
CG2
|
B:VAL267
|
3.9
|
23.3
|
1.0
|
CA
|
B:PHE266
|
3.9
|
22.1
|
1.0
|
CA
|
B:TYR264
|
4.0
|
26.6
|
1.0
|
C
|
B:TYR264
|
4.1
|
29.8
|
1.0
|
CA
|
B:MSE263
|
4.1
|
39.8
|
1.0
|
CD2
|
B:PHE266
|
4.1
|
32.1
|
1.0
|
C
|
B:MSE263
|
4.1
|
34.8
|
1.0
|
CA
|
B:SER262
|
4.2
|
25.1
|
1.0
|
OG
|
B:SER316
|
4.2
|
32.2
|
0.5
|
C
|
B:SER262
|
4.2
|
27.5
|
1.0
|
CB
|
B:MSE263
|
4.2
|
36.8
|
1.0
|
CZ
|
B:TYR318
|
4.2
|
16.2
|
0.5
|
C
|
B:PHE266
|
4.2
|
23.4
|
1.0
|
OG
|
B:SER316
|
4.2
|
23.1
|
0.5
|
CB
|
B:VAL267
|
4.2
|
18.7
|
1.0
|
CE1
|
B:TYR318
|
4.3
|
26.4
|
0.5
|
C
|
B:GLY265
|
4.3
|
26.2
|
1.0
|
CB
|
B:TYR264
|
4.3
|
29.2
|
1.0
|
CA
|
B:GLY265
|
4.5
|
27.8
|
1.0
|
CA
|
B:VAL267
|
4.5
|
20.5
|
1.0
|
CG
|
B:PHE266
|
4.5
|
26.4
|
1.0
|
CB
|
B:SER262
|
4.6
|
24.2
|
1.0
|
CG
|
B:MSE263
|
4.9
|
46.1
|
1.0
|
O
|
B:TYR264
|
5.0
|
29.5
|
1.0
|
|
Reference:
Joint Center For Structural Genomics (Jcsg),
Joint Center For Structural Genomics (Jcsg).
N/A N/A.
Page generated: Sat Jul 20 03:06:21 2024
|