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Chlorine in PDB 1w07: Arabidopsis Thaliana Acyl-Coa Oxidase 1

Enzymatic activity of Arabidopsis Thaliana Acyl-Coa Oxidase 1

All present enzymatic activity of Arabidopsis Thaliana Acyl-Coa Oxidase 1:
1.3.3.6;

Protein crystallography data

The structure of Arabidopsis Thaliana Acyl-Coa Oxidase 1, PDB code: 1w07 was solved by A.Henriksen, L.Pedersen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.59 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 85.201, 117.001, 131.047, 90.00, 90.00, 90.00
R / Rfree (%) 20.4 / 24.9

Other elements in 1w07:

The structure of Arabidopsis Thaliana Acyl-Coa Oxidase 1 also contains other interesting chemical elements:

Platinum (Pt) 6 atoms
Calcium (Ca) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Arabidopsis Thaliana Acyl-Coa Oxidase 1 (pdb code 1w07). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Arabidopsis Thaliana Acyl-Coa Oxidase 1, PDB code: 1w07:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 1w07

Go back to Chlorine Binding Sites List in 1w07
Chlorine binding site 1 out of 2 in the Arabidopsis Thaliana Acyl-Coa Oxidase 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Arabidopsis Thaliana Acyl-Coa Oxidase 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1662

b:38.6
occ:1.00
N A:ASN231 3.0 16.6 1.0
N B:GLY230 3.1 17.9 1.0
ND2 A:ASN231 3.4 25.6 1.0
CB A:ASN231 3.5 22.8 1.0
O B:HOH2120 3.7 36.8 1.0
CA A:GLY230 3.8 17.8 1.0
CA B:MET229 3.8 17.6 1.0
CA A:ASN231 3.8 15.7 1.0
CB A:PRO411 3.8 17.6 1.0
C A:GLY230 3.8 17.1 1.0
CG A:ASN231 3.9 27.3 1.0
C B:MET229 3.9 16.9 1.0
CA B:GLY230 4.0 16.3 1.0
C A:PRO411 4.1 16.3 1.0
N A:GLU412 4.1 15.0 1.0
O A:PRO411 4.3 13.1 1.0
CD1 A:TRP406 4.3 28.8 1.0
O A:ASN231 4.4 16.9 1.0
CA A:GLU412 4.5 15.5 1.0
CG B:MET229 4.5 21.1 1.0
CA A:PRO411 4.6 16.3 1.0
CB B:MET229 4.6 18.9 1.0
C A:ASN231 4.6 14.3 1.0
O B:LYS228 4.7 10.9 1.0
C B:GLY230 4.7 18.0 1.0
N B:MET229 4.8 17.2 1.0
CB A:GLU412 4.9 15.3 1.0

Chlorine binding site 2 out of 2 in 1w07

Go back to Chlorine Binding Sites List in 1w07
Chlorine binding site 2 out of 2 in the Arabidopsis Thaliana Acyl-Coa Oxidase 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Arabidopsis Thaliana Acyl-Coa Oxidase 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1661

b:18.9
occ:1.00
O B:HOH2251 3.1 23.0 1.0
N A:GLY230 3.2 14.7 1.0
N B:ASN231 3.2 19.3 1.0
ND2 B:ASN231 3.6 20.0 1.0
CD1 B:TRP406 3.7 19.5 1.0
CA B:GLY230 3.8 16.3 1.0
CB B:PRO411 3.8 13.2 1.0
CA A:MET229 3.8 15.7 1.0
CB B:ASN231 3.9 20.6 1.0
C B:GLY230 4.0 18.0 1.0
C A:MET229 4.0 17.4 1.0
C B:PRO411 4.0 11.7 1.0
NE1 B:TRP406 4.1 21.8 1.0
CA A:GLY230 4.1 17.8 1.0
N B:GLU412 4.1 10.8 1.0
CA B:ASN231 4.1 18.4 1.0
CG B:ASN231 4.2 23.8 1.0
O B:PRO411 4.2 9.8 1.0
CG A:MET229 4.3 19.9 1.0
O B:ASN231 4.4 12.5 1.0
CA B:GLU412 4.4 10.9 1.0
CA B:PRO411 4.5 12.2 1.0
CB A:MET229 4.6 17.2 1.0
O A:LYS228 4.7 16.1 1.0
C B:ASN231 4.7 16.6 1.0
C A:GLY230 4.8 17.1 1.0
O B:HOH2120 4.8 36.8 1.0
N A:MET229 4.9 17.1 1.0
CB B:GLU412 4.9 9.5 1.0
CG B:TRP406 5.0 15.8 1.0

Reference:

L.Pedersen, A.Henriksen. Acyl-Coa Oxidase 1 From Arabidopsis Thaliana. Structure of A Key Enzyme in Plant Lipid Metabolism J.Mol.Biol. V. 345 487 2005.
ISSN: ISSN 0022-2836
PubMed: 15581893
DOI: 10.1016/J.JMB.2004.10.062
Page generated: Wed Oct 28 10:27:05 2020

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