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Chlorine in PDB 1w6z: High Energy Tetragonal Lysozyme X-Ray Structure

Enzymatic activity of High Energy Tetragonal Lysozyme X-Ray Structure

All present enzymatic activity of High Energy Tetragonal Lysozyme X-Ray Structure:
3.2.1.17;

Protein crystallography data

The structure of High Energy Tetragonal Lysozyme X-Ray Structure, PDB code: 1w6z was solved by J.Jakoncic, M.Aslantas, V.Honkimaki, M.Di Michiel, V.Stojanoff, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.49 / 1.65
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.453, 77.453, 37.183, 90.00, 90.00, 90.00
R / Rfree (%) 19.7 / 22.6

Other elements in 1w6z:

The structure of High Energy Tetragonal Lysozyme X-Ray Structure also contains other interesting chemical elements:

Holmium (Ho) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the High Energy Tetragonal Lysozyme X-Ray Structure (pdb code 1w6z). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the High Energy Tetragonal Lysozyme X-Ray Structure, PDB code: 1w6z:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 1w6z

Go back to Chlorine Binding Sites List in 1w6z
Chlorine binding site 1 out of 5 in the High Energy Tetragonal Lysozyme X-Ray Structure


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of High Energy Tetragonal Lysozyme X-Ray Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1133

b:28.3
occ:1.00
 N A:ILE88 3.3 14.9 1.0
CG1 A:ILE88 3.5 14.8 1.0
NH2 A:ARG14 3.5 20.0 1.0
OD1 A:ASP87 3.7 17.6 1.0
NE2 A:HIS15 3.8 20.8 1.0
CA A:ASP87 3.9 16.2 1.0
C A:ASP87 4.1 15.1 1.0
CB A:ILE88 4.2 13.9 1.0
CA A:ILE88 4.2 14.1 1.0
CB A:ALA11 4.2 13.7 1.0
CG A:ASP87 4.3 19.3 1.0
O A:SER86 4.3 18.6 1.0
CD2 A:HIS15 4.3 19.8 1.0
CZ A:PHE3 4.3 12.2 1.0
CG2 A:ILE88 4.3 12.9 1.0
CD1 A:ILE88 4.5 14.4 1.0
CB A:ASP87 4.6 17.7 1.0
N A:THR89 4.7 14.2 1.0
CZ A:ARG14 4.8 20.9 1.0
C A:ILE88 4.9 13.8 1.0
CE1 A:HIS15 4.9 19.5 1.0
CE2 A:PHE3 4.9 11.1 1.0
N A:ASP87 5.0 16.4 1.0

Chlorine binding site 2 out of 5 in 1w6z

Go back to Chlorine Binding Sites List in 1w6z
Chlorine binding site 2 out of 5 in the High Energy Tetragonal Lysozyme X-Ray Structure


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of High Energy Tetragonal Lysozyme X-Ray Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1134

b:13.7
occ:1.00
 OH A:TYR23 3.0 9.9 1.0
O A:HOH2021 3.0 20.8 1.0
O A:HOH2022 3.3 14.7 1.0
CZ A:TYR23 3.7 9.6 1.0
CE2 A:TYR23 3.7 10.0 1.0
CA A:GLY104 4.2 10.4 1.0
O A:ARG21 4.5 12.7 1.0
N A:GLY104 4.8 10.8 1.0
CE1 A:TYR23 4.9 8.9 1.0
CD2 A:TYR23 4.9 10.2 1.0

Chlorine binding site 3 out of 5 in 1w6z

Go back to Chlorine Binding Sites List in 1w6z
Chlorine binding site 3 out of 5 in the High Energy Tetragonal Lysozyme X-Ray Structure


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of High Energy Tetragonal Lysozyme X-Ray Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1135

b:24.1
occ:1.00
 OG A:SER24 3.0 16.8 1.0
N A:GLY26 3.2 12.3 1.0
CB A:SER24 3.5 13.7 1.0
CA A:GLY26 3.6 12.1 1.0
CA A:GLN121 3.7 17.0 1.0
N A:GLN121 4.1 16.0 1.0
CB A:GLN121 4.1 20.6 1.0
N A:LEU25 4.2 11.7 1.0
CG2 A:VAL120 4.2 14.5 1.0
O A:VAL120 4.3 15.7 1.0
C A:SER24 4.3 13.3 1.0
CG1 A:ILE124 4.3 16.9 1.0
C A:VAL120 4.3 16.2 1.0
C A:LEU25 4.3 12.3 1.0
CG A:GLN121 4.3 26.0 1.0
CA A:SER24 4.5 13.1 1.0
C A:GLY26 4.6 12.1 1.0
CA A:LEU25 4.7 12.3 1.0
N A:ASN27 4.7 10.9 1.0
O A:SER24 4.7 11.9 1.0
C A:GLN121 4.8 16.1 1.0
CB A:LEU25 5.0 12.9 1.0

Chlorine binding site 4 out of 5 in 1w6z

Go back to Chlorine Binding Sites List in 1w6z
Chlorine binding site 4 out of 5 in the High Energy Tetragonal Lysozyme X-Ray Structure


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of High Energy Tetragonal Lysozyme X-Ray Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1136

b:34.6
occ:1.00
 NZ A:LYS33 3.6 18.0 1.0
CE2 A:PHE38 3.7 9.2 1.0
CZ3 A:TRP123 4.0 13.6 1.0
CE A:LYS33 4.1 15.8 1.0
CD A:LYS33 4.1 12.6 1.0
CD A:ARG5 4.3 16.5 1.0
CB A:ARG5 4.4 14.4 1.0
CZ A:PHE38 4.4 10.1 1.0
CD2 A:PHE38 4.6 12.4 1.0
CG A:ARG5 4.7 15.2 1.0
O A:HOH2006 4.8 22.6 1.0
CE3 A:TRP123 4.9 13.7 1.0
CH2 A:TRP123 4.9 13.6 1.0
NE A:ARG5 4.9 16.9 1.0

Chlorine binding site 5 out of 5 in 1w6z

Go back to Chlorine Binding Sites List in 1w6z
Chlorine binding site 5 out of 5 in the High Energy Tetragonal Lysozyme X-Ray Structure


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of High Energy Tetragonal Lysozyme X-Ray Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1137

b:27.4
occ:1.00
 N A:THR69 3.0 17.9 1.0
O A:HOH2064 3.1 15.4 1.0
O A:THR69 3.3 20.5 1.0
N A:ARG68 3.4 15.9 1.0
C A:THR69 3.5 21.1 1.0
CA A:GLY67 3.6 15.5 1.0
C A:GLY67 3.6 16.3 1.0
O A:HOH2067 3.6 39.1 1.0
OD1 A:ASN65 3.7 15.4 1.0
OG A:SER72 3.7 27.8 1.0
N A:GLY67 3.7 14.6 1.0
CA A:THR69 3.7 18.7 1.0
CB A:THR69 4.0 17.6 1.0
O A:HOH2063 4.0 18.4 1.0
C A:ARG68 4.1 16.3 1.0
OD1 A:ASP66 4.1 13.2 1.0
CA A:ARG68 4.2 16.3 1.0
O A:GLY67 4.4 19.4 1.0
N A:PRO70 4.4 24.3 1.0
O A:HOH2059 4.6 15.5 1.0
OG1 A:THR69 4.6 14.8 1.0
C A:ASP66 4.7 13.8 1.0
N A:ASP66 4.8 12.8 1.0
CG A:ASN65 4.9 14.9 1.0
CB A:SER72 4.9 30.0 1.0

Reference:

J.Jakoncic, M.Di Michiel, Z.Zhong, V.Honkimaki, Y.Jouanneau, V.Stojanoff. Anomalous Diffraction at Ultra-High Energy For Protein Crystallography. J.Appl.Crystallogr. V. 39 831 2006.
ISSN: ISSN 0021-8898
DOI: 10.1107/S0021889806036387
Page generated: Sat Jul 20 03:35:17 2024

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