Atomistry » Chlorine » PDB 1vq4-1wbn » 1w6z
Atomistry »
  Chlorine »
    PDB 1vq4-1wbn »
      1w6z »

Chlorine in PDB 1w6z: High Energy Tetragonal Lysozyme X-Ray Structure

Enzymatic activity of High Energy Tetragonal Lysozyme X-Ray Structure

All present enzymatic activity of High Energy Tetragonal Lysozyme X-Ray Structure:
3.2.1.17;

Protein crystallography data

The structure of High Energy Tetragonal Lysozyme X-Ray Structure, PDB code: 1w6z was solved by J.Jakoncic, M.Aslantas, V.Honkimaki, M.Di Michiel, V.Stojanoff, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.49 / 1.65
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.453, 77.453, 37.183, 90.00, 90.00, 90.00
R / Rfree (%) 19.7 / 22.6

Other elements in 1w6z:

The structure of High Energy Tetragonal Lysozyme X-Ray Structure also contains other interesting chemical elements:

Holmium (Ho) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the High Energy Tetragonal Lysozyme X-Ray Structure (pdb code 1w6z). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the High Energy Tetragonal Lysozyme X-Ray Structure, PDB code: 1w6z:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 1w6z

Go back to Chlorine Binding Sites List in 1w6z
Chlorine binding site 1 out of 5 in the High Energy Tetragonal Lysozyme X-Ray Structure


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of High Energy Tetragonal Lysozyme X-Ray Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1133

b:28.3
occ:1.00
 N A:ILE88 3.3 14.9 1.0
CG1 A:ILE88 3.5 14.8 1.0
NH2 A:ARG14 3.5 20.0 1.0
OD1 A:ASP87 3.7 17.6 1.0
NE2 A:HIS15 3.8 20.8 1.0
CA A:ASP87 3.9 16.2 1.0
C A:ASP87 4.1 15.1 1.0
CB A:ILE88 4.2 13.9 1.0
CA A:ILE88 4.2 14.1 1.0
CB A:ALA11 4.2 13.7 1.0
CG A:ASP87 4.3 19.3 1.0
O A:SER86 4.3 18.6 1.0
CD2 A:HIS15 4.3 19.8 1.0
CZ A:PHE3 4.3 12.2 1.0
CG2 A:ILE88 4.3 12.9 1.0
CD1 A:ILE88 4.5 14.4 1.0
CB A:ASP87 4.6 17.7 1.0
N A:THR89 4.7 14.2 1.0
CZ A:ARG14 4.8 20.9 1.0
C A:ILE88 4.9 13.8 1.0
CE1 A:HIS15 4.9 19.5 1.0
CE2 A:PHE3 4.9 11.1 1.0
N A:ASP87 5.0 16.4 1.0

Chlorine binding site 2 out of 5 in 1w6z

Go back to Chlorine Binding Sites List in 1w6z
Chlorine binding site 2 out of 5 in the High Energy Tetragonal Lysozyme X-Ray Structure


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of High Energy Tetragonal Lysozyme X-Ray Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1134

b:13.7
occ:1.00
 OH A:TYR23 3.0 9.9 1.0
O A:HOH2021 3.0 20.8 1.0
O A:HOH2022 3.3 14.7 1.0
CZ A:TYR23 3.7 9.6 1.0
CE2 A:TYR23 3.7 10.0 1.0
CA A:GLY104 4.2 10.4 1.0
O A:ARG21 4.5 12.7 1.0
N A:GLY104 4.8 10.8 1.0
CE1 A:TYR23 4.9 8.9 1.0
CD2 A:TYR23 4.9 10.2 1.0

Chlorine binding site 3 out of 5 in 1w6z

Go back to Chlorine Binding Sites List in 1w6z
Chlorine binding site 3 out of 5 in the High Energy Tetragonal Lysozyme X-Ray Structure


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of High Energy Tetragonal Lysozyme X-Ray Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1135

b:24.1
occ:1.00
 OG A:SER24 3.0 16.8 1.0
N A:GLY26 3.2 12.3 1.0
CB A:SER24 3.5 13.7 1.0
CA A:GLY26 3.6 12.1 1.0
CA A:GLN121 3.7 17.0 1.0
N A:GLN121 4.1 16.0 1.0
CB A:GLN121 4.1 20.6 1.0
N A:LEU25 4.2 11.7 1.0
CG2 A:VAL120 4.2 14.5 1.0
O A:VAL120 4.3 15.7 1.0
C A:SER24 4.3 13.3 1.0
CG1 A:ILE124 4.3 16.9 1.0
C A:VAL120 4.3 16.2 1.0
C A:LEU25 4.3 12.3 1.0
CG A:GLN121 4.3 26.0 1.0
CA A:SER24 4.5 13.1 1.0
C A:GLY26 4.6 12.1 1.0
CA A:LEU25 4.7 12.3 1.0
N A:ASN27 4.7 10.9 1.0
O A:SER24 4.7 11.9 1.0
C A:GLN121 4.8 16.1 1.0
CB A:LEU25 5.0 12.9 1.0

Chlorine binding site 4 out of 5 in 1w6z

Go back to Chlorine Binding Sites List in 1w6z
Chlorine binding site 4 out of 5 in the High Energy Tetragonal Lysozyme X-Ray Structure


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of High Energy Tetragonal Lysozyme X-Ray Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1136

b:34.6
occ:1.00
 NZ A:LYS33 3.6 18.0 1.0
CE2 A:PHE38 3.7 9.2 1.0
CZ3 A:TRP123 4.0 13.6 1.0
CE A:LYS33 4.1 15.8 1.0
CD A:LYS33 4.1 12.6 1.0
CD A:ARG5 4.3 16.5 1.0
CB A:ARG5 4.4 14.4 1.0
CZ A:PHE38 4.4 10.1 1.0
CD2 A:PHE38 4.6 12.4 1.0
CG A:ARG5 4.7 15.2 1.0
O A:HOH2006 4.8 22.6 1.0
CE3 A:TRP123 4.9 13.7 1.0
CH2 A:TRP123 4.9 13.6 1.0
NE A:ARG5 4.9 16.9 1.0

Chlorine binding site 5 out of 5 in 1w6z

Go back to Chlorine Binding Sites List in 1w6z
Chlorine binding site 5 out of 5 in the High Energy Tetragonal Lysozyme X-Ray Structure


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of High Energy Tetragonal Lysozyme X-Ray Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1137

b:27.4
occ:1.00
 N A:THR69 3.0 17.9 1.0
O A:HOH2064 3.1 15.4 1.0
O A:THR69 3.3 20.5 1.0
N A:ARG68 3.4 15.9 1.0
C A:THR69 3.5 21.1 1.0
CA A:GLY67 3.6 15.5 1.0
C A:GLY67 3.6 16.3 1.0
O A:HOH2067 3.6 39.1 1.0
OD1 A:ASN65 3.7 15.4 1.0
OG A:SER72 3.7 27.8 1.0
N A:GLY67 3.7 14.6 1.0
CA A:THR69 3.7 18.7 1.0
CB A:THR69 4.0 17.6 1.0
O A:HOH2063 4.0 18.4 1.0
C A:ARG68 4.1 16.3 1.0
OD1 A:ASP66 4.1 13.2 1.0
CA A:ARG68 4.2 16.3 1.0
O A:GLY67 4.4 19.4 1.0
N A:PRO70 4.4 24.3 1.0
O A:HOH2059 4.6 15.5 1.0
OG1 A:THR69 4.6 14.8 1.0
C A:ASP66 4.7 13.8 1.0
N A:ASP66 4.8 12.8 1.0
CG A:ASN65 4.9 14.9 1.0
CB A:SER72 4.9 30.0 1.0

Reference:

J.Jakoncic, M.Di Michiel, Z.Zhong, V.Honkimaki, Y.Jouanneau, V.Stojanoff. Anomalous Diffraction at Ultra-High Energy For Protein Crystallography. J.Appl.Crystallogr. V. 39 831 2006.
ISSN: ISSN 0021-8898
DOI: 10.1107/S0021889806036387
Page generated: Sat Jul 20 03:35:17 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy