Chlorine in PDB 1wdu: Endonuclease Domain of TRAS1, A Telomere-Specific Non-Ltr Retrotransposon

The structure of Endonuclease Domain of TRAS1, A Telomere-Specific Non-Ltr Retrotransposon, PDB code: 1wdu was solved by N.Maita, T.Anzai, H.Aoyagi, H.Mizuno, H.Fujiwara, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.40
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	64.645, 64.645, 117.315, 90.00, 90.00, 120.00
R / Rfree (%)	22.5 / 25.3

The binding sites of Chlorine atom in the Endonuclease Domain of TRAS1, A Telomere-Specific Non-Ltr Retrotransposon (pdb code 1wdu). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Endonuclease Domain of TRAS1, A Telomere-Specific Non-Ltr Retrotransposon, PDB code: 1wdu:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Endonuclease Domain of TRAS1, A Telomere-Specific Non-Ltr Retrotransposon


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Endonuclease Domain of TRAS1, A Telomere-Specific Non-Ltr Retrotransposon within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl250 b:38.3 occ:1.00 N A:LYS168 3.1 39.3 1.0 N A:ARG209 3.4 42.1 1.0 CA A:SER208 3.5 49.2 1.0 CA A:SER167 3.6 38.7 1.0 CB A:SER208 3.6 50.0 1.0 CB A:SER167 3.7 39.1 1.0 C A:SER167 3.8 39.2 1.0 CB A:LYS168 3.9 42.1 1.0 C A:SER208 3.9 46.3 1.0 CD A:LYS161 4.0 39.6 1.0 CA A:LYS168 4.1 41.6 1.0 NZ A:LYS161 4.1 47.4 1.0 OG A:SER167 4.2 40.9 1.0 CE A:LYS161 4.2 41.5 1.0 CA A:ARG209 4.4 40.2 1.0 O A:ARG209 4.4 35.9 1.0 CG A:LYS161 4.5 36.3 1.0 O A:GLN207 4.6 56.2 1.0 CB A:ARG209 4.7 40.3 1.0 C A:ARG209 4.7 38.1 1.0 N A:SER208 4.7 53.4 1.0 CB A:LYS161 4.9 34.7 1.0 OG A:SER208 4.9 48.5 1.0 N A:SER167 4.9 38.1 1.0

Chlorine binding site 2 out of 2 in the Endonuclease Domain of TRAS1, A Telomere-Specific Non-Ltr Retrotransposon


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Endonuclease Domain of TRAS1, A Telomere-Specific Non-Ltr Retrotransposon within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl249 b:32.1 occ:1.00 N B:ARG209 3.1 35.2 1.0 N B:LYS168 3.2 35.8 1.0 CA B:SER208 3.5 38.1 1.0 CA B:SER167 3.7 31.6 1.0 NZ B:LYS161 3.8 39.6 1.0 CB B:SER208 3.8 36.5 1.0 CB B:SER167 3.8 30.9 1.0 C B:SER208 3.8 37.6 1.0 CB B:LYS168 3.9 40.1 1.0 O B:ARG209 4.0 27.6 1.0 C B:SER167 4.0 33.0 1.0 CD B:LYS161 4.0 38.0 1.0 CA B:ARG209 4.1 32.7 1.0 OG B:SER167 4.2 29.7 1.0 CA B:LYS168 4.2 36.6 1.0 CB B:ARG209 4.2 32.2 1.0 C B:ARG209 4.2 31.0 1.0 CG B:LYS161 4.3 34.6 1.0 CE B:LYS161 4.3 39.2 1.0 O B:GLN207 4.5 43.0 1.0 O B:HOH265 4.6 50.2 1.0 N B:SER208 4.8 41.6 1.0 CB B:LYS161 4.9 32.1 1.0 OG B:SER208 5.0 34.1 1.0

N.Maita, T.Anzai, H.Aoyagi, H.Mizuno, H.Fujiwara. Crystal Structure of the Endonuclease Domain Encoded By the Telomere-Specific Long Interspersed Nuclear Element, TRAS1 J.Biol.Chem. V. 279 41067 2004.
ISSN: ISSN 0021-9258
PubMed: 15247245
DOI: 10.1074/JBC.M406556200