Atomistry » Chlorine » PDB 1wbo-1wve » 1wqo
Atomistry »
  Chlorine »
    PDB 1wbo-1wve »
      1wqo »

Chlorine in PDB 1wqo: Contribution of Hydrogen Bonds to the Conformational Stability of Human Lysozyme

Enzymatic activity of Contribution of Hydrogen Bonds to the Conformational Stability of Human Lysozyme

All present enzymatic activity of Contribution of Hydrogen Bonds to the Conformational Stability of Human Lysozyme:
3.2.1.17;

Protein crystallography data

The structure of Contribution of Hydrogen Bonds to the Conformational Stability of Human Lysozyme, PDB code: 1wqo was solved by Y.Yamagata, M.Kubota, Y.Sumikawa, J.Funahashi, S.Fujii, K.Yutani, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 56.650, 61.020, 33.740, 90.00, 90.00, 90.00
R / Rfree (%) 17 / n/a

Other elements in 1wqo:

The structure of Contribution of Hydrogen Bonds to the Conformational Stability of Human Lysozyme also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Contribution of Hydrogen Bonds to the Conformational Stability of Human Lysozyme (pdb code 1wqo). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Contribution of Hydrogen Bonds to the Conformational Stability of Human Lysozyme, PDB code: 1wqo:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 1wqo

Go back to Chlorine Binding Sites List in 1wqo
Chlorine binding site 1 out of 2 in the Contribution of Hydrogen Bonds to the Conformational Stability of Human Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Contribution of Hydrogen Bonds to the Conformational Stability of Human Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl132

b:14.8
occ:1.00
O A:HOH278 3.2 45.2 1.0
O A:HOH141 3.2 11.4 1.0
ND2 A:ASN66 3.4 12.8 1.0
CA A:SER80 3.7 14.1 1.0
CB A:SER80 3.8 10.8 1.0
CB A:ASN66 3.9 10.0 1.0
CG A:ASN66 4.1 9.4 1.0
N A:SER80 4.2 14.3 1.0
O A:ASN66 4.2 7.5 1.0
OG A:SER80 4.3 15.1 1.0
O A:LEU79 4.4 14.5 1.0
O A:HOH268 4.5 40.1 1.0
C A:LEU79 4.5 14.0 1.0
O A:HOH143 4.7 16.5 1.0
ND2 A:ASN75 4.8 15.9 1.0
C A:ASN66 4.8 9.7 1.0
CA A:ASN66 4.9 11.6 1.0
O A:HOH161 4.9 23.4 1.0

Chlorine binding site 2 out of 2 in 1wqo

Go back to Chlorine Binding Sites List in 1wqo
Chlorine binding site 2 out of 2 in the Contribution of Hydrogen Bonds to the Conformational Stability of Human Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Contribution of Hydrogen Bonds to the Conformational Stability of Human Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl133

b:16.3
occ:1.00
O A:HOH170 2.6 41.3 1.0
O A:HOH143 3.2 16.5 1.0
N A:SER80 3.3 14.3 1.0
CB A:SER80 3.6 10.8 1.0
CD2 A:LEU79 4.0 18.3 1.0
CB A:ALA83 4.0 10.9 1.0
CA A:SER80 4.1 14.1 1.0
CA A:LEU79 4.2 14.7 1.0
C A:LEU79 4.3 14.0 1.0
O A:SER80 4.4 10.3 1.0
CB A:LEU79 4.6 16.5 1.0
C A:SER80 4.8 11.6 1.0
O A:HOH343 4.8 43.8 1.0
OG A:SER80 4.9 15.1 1.0
CG A:LEU79 5.0 17.9 1.0
O A:HOH268 5.0 40.1 1.0

Reference:

Y.Yamagata, M.Kubota, Y.Sumikawa, J.Funahashi, K.Takano, S.Fujii, K.Yutani. Contribution of Hydrogen Bonds to the Conformational Stability of Human Lysozyme: Calorimetry and X-Ray Analysis of Six Tyrosine --> Phenylalanine Mutants. Biochemistry V. 37 9355 1998.
ISSN: ISSN 0006-2960
PubMed: 9649316
DOI: 10.1021/BI980431I
Page generated: Sat Jul 20 03:43:59 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy