Chlorine in PDB 1wyy: Post-Fusion Hairpin Conformation of the Sars Coronavirus Spike Glycoprotein

The structure of Post-Fusion Hairpin Conformation of the Sars Coronavirus Spike Glycoprotein, PDB code: 1wyy was solved by S.Duquerroy, A.Vigouroux, P.J.M.Rottier, F.A.Rey, B.J.Bosch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.20
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	41.983, 41.983, 320.544, 90.00, 90.00, 120.00
R / Rfree (%)	21 / 24.9

The binding sites of Chlorine atom in the Post-Fusion Hairpin Conformation of the Sars Coronavirus Spike Glycoprotein (pdb code 1wyy). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Post-Fusion Hairpin Conformation of the Sars Coronavirus Spike Glycoprotein, PDB code: 1wyy:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Post-Fusion Hairpin Conformation of the Sars Coronavirus Spike Glycoprotein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Post-Fusion Hairpin Conformation of the Sars Coronavirus Spike Glycoprotein within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1 b:47.3 occ:0.33 NE2 A:GLN902 3.1 44.6 1.0 CG A:GLN902 3.4 45.0 1.0 CD A:GLN902 3.7 45.4 1.0 CD1 A:ILE905 3.9 38.0 1.0 CB A:GLN902 4.4 44.0 1.0 CA A:GLN902 4.6 39.0 1.0 OE1 A:GLN902 4.9 43.4 1.0

Chlorine binding site 2 out of 4 in the Post-Fusion Hairpin Conformation of the Sars Coronavirus Spike Glycoprotein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Post-Fusion Hairpin Conformation of the Sars Coronavirus Spike Glycoprotein within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl2 b:57.7 occ:0.33 O A:HOH11 3.0 30.5 1.0 CG2 A:VAL934 4.3 28.4 1.0 CA A:VAL934 4.4 28.9 1.0 CG1 A:VAL934 4.5 24.3 1.0 O A:HOH34 4.6 41.5 1.0 CB A:VAL934 4.7 27.3 1.0 CB A:ASN937 4.7 31.2 1.0 O A:VAL934 4.8 26.3 1.0 ND2 A:ASN937 4.8 26.5 1.0

Chlorine binding site 3 out of 4 in the Post-Fusion Hairpin Conformation of the Sars Coronavirus Spike Glycoprotein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Post-Fusion Hairpin Conformation of the Sars Coronavirus Spike Glycoprotein within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl3 b:56.9 occ:0.33 O B:HOH40 3.0 27.2 1.0 O B:HOH19 4.3 35.1 1.0 CG2 B:VAL934 4.4 29.9 1.0 CA B:VAL934 4.5 29.8 1.0 CB B:ASN937 4.6 30.1 1.0 CG1 B:VAL934 4.7 25.9 1.0 O B:VAL934 4.8 26.8 1.0 CB B:VAL934 4.8 30.6 1.0 ND2 B:ASN937 4.8 25.2 1.0

Chlorine binding site 4 out of 4 in the Post-Fusion Hairpin Conformation of the Sars Coronavirus Spike Glycoprotein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Post-Fusion Hairpin Conformation of the Sars Coronavirus Spike Glycoprotein within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl4 b:52.1 occ:0.33 NE2 B:GLN902 3.0 42.4 1.0 CG B:GLN902 3.2 43.4 1.0 CD B:GLN902 3.6 44.4 1.0 CD1 B:ILE905 4.1 38.0 1.0 CB B:GLN902 4.4 43.5 1.0 CA B:GLN902 4.6 38.4 1.0 OE1 B:GLN902 4.8 40.4 1.0

S.Duquerroy, A.Vigouroux, P.J.M.Rottier, F.A.Rey, B.J.Bosch. Central Ions and Lateral Asparagine/Glutamine Zippers Stabilize the Post-Fusion Hairpin Conformation of the Sars Coronavirus Spike Glycoprotein Virology V. 335 276 2005.
ISSN: ISSN 0042-6822
PubMed: 15840526
DOI: 10.1016/J.VIROL.2005.02.022