Chlorine in PDB 1y4m: Crystal Structure of Human Endogenous Retrovirus Herv-Frd Envelope Protein (Syncitin-2)

The structure of Crystal Structure of Human Endogenous Retrovirus Herv-Frd Envelope Protein (Syncitin-2), PDB code: 1y4m was solved by M.Renard, P.F.Varela, C.Letzelter, S.Duquerroy, F.A.Rey, T.Heidmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.96 / 1.60
Space group	I 4
Cell size a, b, c (Å), α, β, γ (°)	90.404, 90.404, 38.654, 90.00, 90.00, 90.00
R / Rfree (%)	24.8 / 26.2

The binding sites of Chlorine atom in the Crystal Structure of Human Endogenous Retrovirus Herv-Frd Envelope Protein (Syncitin-2) (pdb code 1y4m). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Human Endogenous Retrovirus Herv-Frd Envelope Protein (Syncitin-2), PDB code: 1y4m:

Chlorine binding site 1 out of 1 in the Crystal Structure of Human Endogenous Retrovirus Herv-Frd Envelope Protein (Syncitin-2)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Endogenous Retrovirus Herv-Frd Envelope Protein (Syncitin-2) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl136 b:18.2 occ:1.00 ND2 A:ASN71 3.1 18.7 1.0 ND2 C:ASN71 3.1 16.5 1.0 ND2 B:ASN71 3.2 18.2 1.0 CB C:ASN71 3.7 15.4 1.0 CB A:ASN71 3.8 18.0 1.0 CB B:ASN71 3.8 15.8 1.0 CG1 C:VAL68 3.9 17.6 1.0 CA C:VAL68 3.9 17.1 1.0 CG C:ASN71 3.9 13.6 1.0 CG A:ASN71 3.9 18.4 1.0 CG1 B:VAL68 3.9 17.7 1.0 CA A:VAL68 4.0 18.7 1.0 CG B:ASN71 4.0 17.3 1.0 CG2 C:VAL68 4.0 17.0 1.0 CG1 A:VAL68 4.0 19.2 1.0 CA B:VAL68 4.0 17.5 1.0 CG2 B:VAL68 4.1 18.8 1.0 CG2 A:VAL68 4.1 18.1 1.0 CB C:VAL68 4.1 16.5 1.0 CB B:VAL68 4.2 18.1 1.0 CB A:VAL68 4.3 19.6 1.0 O C:VAL68 4.4 15.5 1.0 O A:VAL68 4.4 19.7 1.0 O B:VAL68 4.5 17.0 1.0 C C:VAL68 4.7 16.0 1.0 C A:VAL68 4.7 19.9 1.0 C B:VAL68 4.8 17.1 1.0 N C:VAL68 4.9 15.8 1.0 N A:VAL68 4.9 18.9 1.0 N B:VAL68 5.0 18.0 1.0

M.Renard, P.F.Varela, C.Letzelter, S.Duquerroy, F.A.Rey, T.Heidmann. Crystal Structure of A Pivotal Domain of Human Syncytin-2, A 40 Million Years Old Endogenous Retrovirus Fusogenic Envelope Gene Captured By Primates. J.Mol.Biol. V. 352 1029 2005.
ISSN: ISSN 0022-2836
PubMed: 16140326
DOI: 10.1016/J.JMB.2005.07.058