Chlorine in PDB 1yd6: Crystal Structure of the Giy-Yig N-Terminal Endonuclease Domain of Uvrc From Bacillus Caldotenax

The structure of Crystal Structure of the Giy-Yig N-Terminal Endonuclease Domain of Uvrc From Bacillus Caldotenax, PDB code: 1yd6 was solved by J.J.Truglio, B.Rhau, D.L.Croteau, L.Wang, M.Skorvaga, E.Karakas, M.J.Dellavecchia, H.Wang, B.Van Houten, C.Kisker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	15.00 / 2.00
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	86.487, 86.660, 67.862, 90.00, 120.16, 90.00
R / Rfree (%)	20.2 / 25.2

The binding sites of Chlorine atom in the Crystal Structure of the Giy-Yig N-Terminal Endonuclease Domain of Uvrc From Bacillus Caldotenax (pdb code 1yd6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of the Giy-Yig N-Terminal Endonuclease Domain of Uvrc From Bacillus Caldotenax, PDB code: 1yd6:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Crystal Structure of the Giy-Yig N-Terminal Endonuclease Domain of Uvrc From Bacillus Caldotenax


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Giy-Yig N-Terminal Endonuclease Domain of Uvrc From Bacillus Caldotenax within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1001 b:26.5 occ:1.00 ND2 C:ASN80 3.1 22.9 1.0 ND2 B:ASN80 3.2 27.4 1.0 ND2 D:ASN80 3.3 21.6 1.0 ND2 A:ASN80 3.4 25.6 1.0 O D:HOH104 3.6 30.3 1.0 O B:HOH104 3.6 31.6 1.0 OD1 A:ASN80 3.9 25.2 1.0 OD1 D:ASN80 3.9 24.7 1.0 OD1 C:ASN80 4.0 25.9 1.0 CG C:ASN80 4.0 25.4 1.0 OD1 B:ASN80 4.0 27.2 1.0 CG B:ASN80 4.1 29.1 1.0 CG2 C:ILE76 4.1 23.1 1.0 CG A:ASN80 4.1 25.9 1.0 CG D:ASN80 4.1 24.4 1.0 CG2 B:ILE76 4.1 23.6 1.0 CG2 D:ILE76 4.2 23.1 1.0 CG2 A:ILE76 4.2 22.9 1.0

Chlorine binding site 2 out of 3 in the Crystal Structure of the Giy-Yig N-Terminal Endonuclease Domain of Uvrc From Bacillus Caldotenax


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Giy-Yig N-Terminal Endonuclease Domain of Uvrc From Bacillus Caldotenax within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1005 b:40.5 occ:1.00 NE2 C:HIS85 3.1 27.9 1.0 NZ C:LYS84 3.2 31.3 1.0 CD1 D:LEU75 3.5 29.3 1.0 O C:HOH1051 3.7 59.7 1.0 CD C:LYS84 3.8 27.8 1.0 CE1 C:HIS85 3.8 30.9 1.0 CD2 C:LEU81 3.9 25.6 1.0 CE C:LYS84 3.9 30.4 1.0 CD2 C:LEU20 4.2 31.0 1.0 CD2 C:HIS85 4.2 29.0 1.0 CD1 C:ILE66 4.9 26.8 1.0 CG D:LEU75 4.9 27.6 1.0 CG C:LYS84 5.0 27.7 1.0

Chlorine binding site 3 out of 3 in the Crystal Structure of the Giy-Yig N-Terminal Endonuclease Domain of Uvrc From Bacillus Caldotenax


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the Giy-Yig N-Terminal Endonuclease Domain of Uvrc From Bacillus Caldotenax within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1006 b:50.8 occ:1.00 OG C:SER36 2.7 24.3 1.0 CB C:SER36 3.6 27.3 1.0 OE2 C:GLU14 3.7 33.6 1.0 CB C:GLU39 3.9 30.5 1.0 CD C:LYS38 3.9 35.7 1.0 CG C:GLU14 4.0 27.2 1.0 N C:GLU39 4.1 29.1 1.0 CD C:GLU14 4.2 28.4 1.0 CB C:LYS38 4.3 27.9 1.0 CG C:LYS38 4.4 33.4 1.0 CA C:GLU39 4.4 30.0 1.0 CB C:GLU14 4.6 24.8 1.0 O C:HOH1028 4.8 35.4 1.0 C C:LYS38 5.0 28.9 1.0 CG C:GLU39 5.0 33.8 1.0 CE C:LYS38 5.0 38.0 1.0

J.J.Truglio, B.Rhau, D.L.Croteau, L.Wang, M.Skorvaga, E.Karakas, M.J.Dellavecchia, H.Wang, B.Van Houten, C.Kisker. Structural Insights Into the First Incision Reaction During Nucleotide Excision Repair Embo J. V. 24 885 2005.
ISSN: ISSN 0261-4189
PubMed: 15692561
DOI: 10.1038/SJ.EMBOJ.7600568