Chlorine in PDB 1ydx: Crystal Structure of Type-I Restriction-Modification System S Subunit From M. Genitalium

The structure of Crystal Structure of Type-I Restriction-Modification System S Subunit From M. Genitalium, PDB code: 1ydx was solved by B.Machado, O.Quijada, J.Pinol, I.Fita, E.Querol, X.Carpena, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.30
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	76.601, 76.601, 174.847, 90.00, 90.00, 120.00
R / Rfree (%)	19.7 / 23.1

The binding sites of Chlorine atom in the Crystal Structure of Type-I Restriction-Modification System S Subunit From M. Genitalium (pdb code 1ydx). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Type-I Restriction-Modification System S Subunit From M. Genitalium, PDB code: 1ydx:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Type-I Restriction-Modification System S Subunit From M. Genitalium


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Type-I Restriction-Modification System S Subunit From M. Genitalium within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl384 b:43.7 occ:1.00 N A:THR123 3.1 38.0 1.0 N A:ILE124 3.3 35.2 1.0 N A:THR122 3.3 40.8 1.0 CA A:THR123 3.7 37.1 1.0 CB A:THR123 3.8 37.1 1.0 O A:ILE124 3.9 34.5 1.0 C A:THR123 4.0 35.9 1.0 C A:THR122 4.0 39.3 1.0 CA A:GLY121 4.0 40.7 1.0 C A:GLY121 4.1 40.9 1.0 CA A:THR122 4.1 40.5 1.0 CA A:ILE124 4.3 35.1 1.0 OG1 A:THR122 4.3 41.3 1.0 C A:ILE124 4.4 34.8 1.0 OG1 A:THR123 4.5 37.3 1.0 CB A:THR122 4.6 41.0 1.0 CB A:ILE124 4.7 35.3 1.0 CG2 A:THR123 4.9 37.8 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Type-I Restriction-Modification System S Subunit From M. Genitalium


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Type-I Restriction-Modification System S Subunit From M. Genitalium within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl385 b:50.5 occ:1.00 NE2 A:GLN300 3.1 37.5 1.0 CE A:LYS304 3.5 40.7 1.0 CD A:LYS304 3.5 40.5 1.0 CG A:GLN300 3.8 34.9 1.0 CD A:GLN300 3.9 36.6 1.0 CA A:LYS301 4.0 37.2 1.0 N A:LYS301 4.0 36.6 1.0 CB A:LYS301 4.1 37.5 1.0 C A:GLN300 4.4 36.3 1.0 O A:GLN300 4.6 37.0 1.0 CB A:GLN300 4.6 36.1 1.0 CG A:LYS304 4.7 39.1 1.0 NZ A:LYS304 4.7 42.9 1.0 CD A:LYS301 4.9 42.3 1.0 O A:HOH432 4.9 39.1 1.0

B.M.Calisto, O.Q.Pich, J.Pinol, I.Fita, E.Querol, X.Carpena. Crystal Structure of A Putative Type I Restriction-Modification S Subunit From Mycoplasma Genitalium J.Mol.Biol. V. 351 749 2005.
ISSN: ISSN 0022-2836
PubMed: 16038930
DOI: 10.1016/J.JMB.2005.06.050