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Chlorine in PDB 1yyv: Putative Transcriptional Regulator Ytfh From Salmonella Typhimurium

Protein crystallography data

The structure of Putative Transcriptional Regulator Ytfh From Salmonella Typhimurium, PDB code: 1yyv was solved by J.Osipiuk, P.Quartey, L.Lezondra, S.Moy, F.Collart, A.Joachimiak, Midwestcenter For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 2.35
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.285, 79.285, 105.115, 90.00, 90.00, 90.00
R / Rfree (%) 20.1 / 24.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Putative Transcriptional Regulator Ytfh From Salmonella Typhimurium (pdb code 1yyv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Putative Transcriptional Regulator Ytfh From Salmonella Typhimurium, PDB code: 1yyv:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 1yyv

Go back to Chlorine Binding Sites List in 1yyv
Chlorine binding site 1 out of 2 in the Putative Transcriptional Regulator Ytfh From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Putative Transcriptional Regulator Ytfh From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:54.9
occ:1.00
ND1 A:HIS87 3.0 40.0 0.5
N A:VAL88 3.2 45.3 1.0
CB A:PHE48 3.4 47.8 1.0
N A:PHE48 3.5 48.4 1.0
O A:VAL88 3.5 45.3 1.0
CA A:HIS87 3.5 44.9 1.0
CB A:HIS87 3.6 45.0 0.5
CB A:HIS87 3.7 44.5 0.5
CG A:HIS87 3.8 42.6 0.5
N A:SER49 3.8 48.9 1.0
CA A:PHE48 3.9 48.1 1.0
C A:HIS87 3.9 45.1 1.0
CB A:ARG47 3.9 48.2 0.5
CG1 A:VAL88 3.9 44.4 1.0
CB A:ARG47 4.0 48.0 0.5
CE1 A:HIS87 4.1 41.5 0.5
CA A:VAL88 4.3 45.2 1.0
C A:VAL88 4.3 45.2 1.0
C A:ARG47 4.3 48.4 1.0
C A:PHE48 4.4 48.2 1.0
CA A:ARG47 4.5 47.5 1.0
O A:PRO86 4.6 45.8 1.0
CG A:PHE48 4.6 48.3 1.0
OG A:SER49 4.7 50.3 1.0
CB A:SER49 4.7 49.5 1.0
CB A:VAL88 4.7 45.1 1.0
N A:HIS87 4.8 45.4 1.0
CA A:SER49 4.9 49.0 1.0
CD2 A:HIS87 5.0 40.8 0.5

Chlorine binding site 2 out of 2 in 1yyv

Go back to Chlorine Binding Sites List in 1yyv
Chlorine binding site 2 out of 2 in the Putative Transcriptional Regulator Ytfh From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Putative Transcriptional Regulator Ytfh From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl201

b:48.9
occ:1.00
N B:SER49 3.5 34.6 1.0
N B:PHE48 3.5 34.4 1.0
CB B:HIS87 3.5 45.3 1.0
CB B:PHE48 3.6 32.0 1.0
N B:VAL88 3.7 42.1 1.0
O B:VAL88 3.7 38.5 1.0
OG B:SER49 3.7 39.9 1.0
CB B:ARG47 3.8 36.3 1.0
CA B:PHE48 3.9 33.4 1.0
CA B:HIS87 4.0 44.8 1.0
CB B:SER49 4.0 35.9 1.0
C B:PHE48 4.2 34.0 1.0
CD B:ARG47 4.2 39.2 1.0
C B:ARG47 4.3 35.4 1.0
C B:HIS87 4.4 43.2 1.0
CA B:SER49 4.4 35.1 1.0
CA B:ARG47 4.4 36.5 1.0
CG B:ARG47 4.4 38.9 1.0
CG B:HIS87 4.5 48.6 1.0
C B:VAL88 4.6 39.7 1.0
CG1 B:VAL88 4.6 42.8 1.0
CA B:VAL88 4.6 40.5 1.0
CG B:PHE48 4.7 31.5 1.0
CD2 B:HIS87 4.8 53.2 1.0
CD2 B:PHE48 4.9 30.2 1.0

Reference:

J.Osipiuk, P.Quartey, L.Lezondra, S.Moy, F.Collart, A.Joachimiak. X-Ray Crystal Structure of Putative Transcriptional Regulator Ytfh From Salmonella Typhimurium. To Be Published.
Page generated: Sat Dec 12 08:56:29 2020

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