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Chlorine in PDB 1z2u: The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance

Enzymatic activity of The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance

All present enzymatic activity of The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance:
6.3.2.19;

Protein crystallography data

The structure of The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance, PDB code: 1z2u was solved by J.A.Gavira, E.Digiamamarino, W.Tempel, Z.J.Liu, B.C.Wang, E.Meehan, J.D.Ng, Southeast Collaboratory For Structural Genomics (Secsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 29.604, 60.457, 43.980, 90.00, 106.45, 90.00
R / Rfree (%) 13.1 / 14.9

Other elements in 1z2u:

The structure of The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance (pdb code 1z2u). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance, PDB code: 1z2u:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 1z2u

Go back to Chlorine Binding Sites List in 1z2u
Chlorine binding site 1 out of 6 in the The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl601

b:9.6
occ:1.00
 NZ A:LYS63 3.1 13.3 1.0
UNK A:UNX502 3.3 15.1 0.0
N A:ASP59 3.3 4.5 1.0
CD A:LYS63 3.5 11.2 1.0
N A:THR58 3.7 5.0 1.0
CE A:LYS63 3.7 13.2 1.0
CB A:ASP59 3.7 5.2 1.0
CB A:THR58 3.8 5.8 1.0
CB A:PRO57 3.8 6.8 1.0
CG A:ASP59 4.0 5.8 1.0
O A:HOH313 4.1 8.4 1.0
CA A:THR58 4.1 5.4 1.0
CA A:ASP59 4.1 4.7 1.0
C A:THR58 4.1 4.3 1.0
OD2 A:ASP59 4.1 7.8 1.0
C A:PRO57 4.3 4.8 1.0
OG1 A:THR58 4.5 7.0 1.0
CA A:PRO57 4.5 5.7 1.0
CG A:LYS63 4.7 8.2 1.0
OD1 A:ASP59 4.7 6.6 1.0
CG2 A:THR58 4.8 6.3 1.0
CG A:PRO57 4.9 7.0 1.0

Chlorine binding site 2 out of 6 in 1z2u

Go back to Chlorine Binding Sites List in 1z2u
Chlorine binding site 2 out of 6 in the The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl602

b:8.3
occ:1.00
 NZ A:LYS144 3.3 6.9 1.0
CG A:LYS144 3.9 7.2 1.0
CA A:LYS144 4.1 5.6 1.0
CE A:LYS144 4.1 6.7 1.0
O A:LYS144 4.1 7.2 1.0
CB A:LYS144 4.1 7.0 1.0
CD A:LYS144 4.5 7.3 1.0
C A:LYS144 4.6 5.8 1.0

Chlorine binding site 3 out of 6 in 1z2u

Go back to Chlorine Binding Sites List in 1z2u
Chlorine binding site 3 out of 6 in the The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl603

b:13.8
occ:1.00
 O A:HOH356 2.9 12.7 1.0
NH1 A:ARG131 3.3 7.4 1.0
CG A:ARG131 3.5 6.1 1.0
CD A:ARG131 3.8 6.3 1.0
ND2 A:ASN135 4.0 12.1 1.0
CZ A:ARG131 4.3 7.2 1.0
O A:HOH309 4.3 8.4 1.0
OD1 A:ASN135 4.4 10.3 1.0
O A:HOH358 4.5 15.2 1.0
NE A:ARG131 4.5 6.9 1.0
CG A:ASN135 4.6 7.2 1.0
CB A:ARG131 5.0 5.8 1.0

Chlorine binding site 4 out of 6 in 1z2u

Go back to Chlorine Binding Sites List in 1z2u
Chlorine binding site 4 out of 6 in the The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl604

b:14.0
occ:1.00
 NH1 A:ARG15 3.1 15.3 1.0
CG A:ARG15 3.6 8.6 1.0
CD A:ARG15 3.7 10.1 1.0
CG A:GLN11 3.8 13.6 1.0
CZ A:ARG15 4.1 11.5 1.0
NE A:ARG15 4.4 11.1 1.0
O A:GLN11 4.5 8.4 1.0

Chlorine binding site 5 out of 6 in 1z2u

Go back to Chlorine Binding Sites List in 1z2u
Chlorine binding site 5 out of 6 in the The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl605

b:8.6
occ:1.00
 NZ A:LYS4 3.2 12.4 1.0
N A:HIS0 3.3 4.9 1.0
CA A:GLY-2 3.5 7.5 1.0
C A:GLY-2 3.6 5.8 1.0
CE A:LYS4 3.6 11.0 1.0
CB A:HIS0 3.6 5.4 1.0
N A:SER-1 3.7 5.1 1.0
CA A:HIS0 3.8 5.1 1.0
CD A:LYS4 3.8 9.3 1.0
N A:GLY-2 3.8 11.7 1.0
ND1 A:HIS0 4.0 8.3 1.0
C A:HIS0 4.1 4.8 1.0
O A:GLY-2 4.1 6.0 1.0
O A:HOH381 4.2 24.9 1.0
CG A:HIS0 4.3 5.8 1.0
C A:SER-1 4.3 4.9 1.0
O A:HIS0 4.5 5.7 1.0
N A:MET1 4.5 5.5 1.0
CA A:SER-1 4.6 4.9 1.0
CG A:LYS4 4.9 7.8 1.0

Chlorine binding site 6 out of 6 in 1z2u

Go back to Chlorine Binding Sites List in 1z2u
Chlorine binding site 6 out of 6 in the The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl606

b:9.1
occ:1.00
 O A:HOH334 3.0 10.5 1.0
O6 A:BU3201 3.1 7.1 1.0
C4 A:BU3201 3.8 8.7 1.0
C3 A:BU3201 3.9 6.7 1.0
CE1 A:TYR145 4.5 6.6 1.0
NZ A:LYS144 4.5 6.9 1.0
CE A:LYS144 4.6 6.7 1.0
OH A:TYR145 5.0 7.5 1.0

Reference:

J.A.Gavira, E.Digiamamarino, W.Tempel, Z.J.Liu, B.C.Wang, E.Meehan, J.D.Ng. The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance To Be Published.
Page generated: Sat Jul 20 04:32:57 2024

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