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Chlorine in PDB 1z85: Crystal Structure of A Predicted Rna Methyltransferase (TM1380) From Thermotoga Maritima MSB8 at 2.12 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Predicted Rna Methyltransferase (TM1380) From Thermotoga Maritima MSB8 at 2.12 A Resolution, PDB code: 1z85 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.32 / 2.12
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 65.652, 82.473, 106.264, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 22.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Predicted Rna Methyltransferase (TM1380) From Thermotoga Maritima MSB8 at 2.12 A Resolution (pdb code 1z85). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of A Predicted Rna Methyltransferase (TM1380) From Thermotoga Maritima MSB8 at 2.12 A Resolution, PDB code: 1z85:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 1z85

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Chlorine binding site 1 out of 6 in the Crystal Structure of A Predicted Rna Methyltransferase (TM1380) From Thermotoga Maritima MSB8 at 2.12 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Predicted Rna Methyltransferase (TM1380) From Thermotoga Maritima MSB8 at 2.12 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl223

b:39.1
occ:1.00
 O A:HOH237 2.9 29.9 1.0
O A:HOH250 3.2 33.7 1.0
O A:HOH259 3.3 35.2 1.0
N A:GLU177 3.3 40.1 1.0
O A:HOH255 3.5 34.9 1.0
CB A:PRO176 3.6 40.1 1.0
CA A:GLY82 3.6 38.4 1.0
CA A:PRO176 3.7 38.7 1.0
CB A:PRO80 3.9 37.8 1.0
C A:PRO176 4.0 39.3 1.0
CB A:GLU177 4.1 42.3 1.0
N A:GLY82 4.1 43.1 1.0
CB A:SER110 4.2 45.8 1.0
O A:ILE81 4.2 40.8 1.0
CA A:GLU177 4.3 39.6 1.0
C A:ILE81 4.4 39.2 1.0
OG A:SER110 4.5 46.7 1.0
CG A:PRO80 4.6 37.1 1.0
O A:HOH241 4.8 30.8 1.0
C A:GLY82 4.9 40.4 1.0
N A:GLY178 4.9 42.6 1.0
O A:HOH253 4.9 34.1 1.0
C A:PRO80 5.0 39.0 1.0
N A:PRO176 5.0 38.5 1.0

Chlorine binding site 2 out of 6 in 1z85

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Chlorine binding site 2 out of 6 in the Crystal Structure of A Predicted Rna Methyltransferase (TM1380) From Thermotoga Maritima MSB8 at 2.12 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Predicted Rna Methyltransferase (TM1380) From Thermotoga Maritima MSB8 at 2.12 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl224

b:42.7
occ:1.00
 O A:HOH276 3.0 39.6 1.0
NH2 A:ARG124 3.1 34.8 1.0
O A:HOH248 3.1 33.2 1.0
NE A:ARG124 3.4 33.4 1.0
CZ A:ARG124 3.7 39.2 1.0
O A:LYS120 3.8 38.2 1.0
C A:LYS120 3.9 39.9 1.0
CB A:LYS120 4.0 37.0 1.0
N A:ILE121 4.1 40.6 1.0
CG1 A:ILE121 4.1 42.9 1.0
CA A:ILE121 4.1 39.5 1.0
CB A:ARG124 4.3 37.2 1.0
O A:HOH303 4.4 44.6 1.0
CD A:ARG124 4.6 43.6 1.0
CA A:LYS120 4.6 39.4 1.0
CE2 A:TYR6 4.7 43.6 1.0
CG A:ARG124 4.7 35.0 1.0
CB A:ILE121 4.8 40.1 1.0
O A:HOH370 4.9 55.7 1.0

Chlorine binding site 3 out of 6 in 1z85

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Chlorine binding site 3 out of 6 in the Crystal Structure of A Predicted Rna Methyltransferase (TM1380) From Thermotoga Maritima MSB8 at 2.12 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Predicted Rna Methyltransferase (TM1380) From Thermotoga Maritima MSB8 at 2.12 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl223

b:28.4
occ:1.00
 O B:HOH231 3.3 29.6 1.0
N B:LEU116 3.3 36.5 1.0
O B:ILE114 3.8 43.2 1.0
CZ B:PHE140 3.8 33.5 1.0
CA B:SER115 3.9 37.0 1.0
CB B:LEU116 3.9 40.1 1.0
C B:SER115 4.1 40.8 1.0
CA B:LEU116 4.2 38.3 1.0
O B:HOH243 4.2 38.1 1.0
CE2 B:PHE140 4.5 40.6 1.0
C B:ILE114 4.7 39.2 1.0
OG B:SER115 4.7 40.6 1.0
N B:SER115 4.8 36.4 1.0
CB B:SER115 4.8 36.4 1.0
CE1 B:PHE140 4.8 42.2 1.0
N B:ASP117 5.0 39.0 1.0

Chlorine binding site 4 out of 6 in 1z85

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Chlorine binding site 4 out of 6 in the Crystal Structure of A Predicted Rna Methyltransferase (TM1380) From Thermotoga Maritima MSB8 at 2.12 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of A Predicted Rna Methyltransferase (TM1380) From Thermotoga Maritima MSB8 at 2.12 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl224

b:36.8
occ:1.00
 O B:HOH229 2.8 28.3 1.0
O B:HOH241 3.2 36.8 1.0
N B:GLU177 3.2 39.3 1.0
O B:HOH232 3.4 30.5 1.0
O B:HOH228 3.4 28.3 1.0
CB B:PRO176 3.7 40.9 1.0
CA B:PRO176 3.7 39.3 1.0
CA B:GLY82 3.7 38.2 1.0
CB B:PRO80 3.9 37.5 1.0
C B:PRO176 3.9 39.8 1.0
O B:ILE81 4.0 34.5 1.0
CB B:GLU177 4.0 41.2 1.0
CA B:GLU177 4.2 38.4 1.0
N B:GLY82 4.3 37.7 1.0
CB B:SER110 4.4 39.9 1.0
C B:ILE81 4.4 40.3 1.0
O B:HOH306 4.4 53.8 1.0
OG B:SER110 4.5 42.9 1.0
CG B:PRO80 4.5 43.8 1.0
O B:HOH251 4.6 39.3 1.0
O B:HOH227 4.7 27.9 1.0
C B:PRO80 4.9 38.2 1.0
C B:GLY82 5.0 38.9 1.0
CA B:PRO80 5.0 36.5 1.0

Chlorine binding site 5 out of 6 in 1z85

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Chlorine binding site 5 out of 6 in the Crystal Structure of A Predicted Rna Methyltransferase (TM1380) From Thermotoga Maritima MSB8 at 2.12 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of A Predicted Rna Methyltransferase (TM1380) From Thermotoga Maritima MSB8 at 2.12 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl225

b:39.4
occ:1.00
 O B:HOH266 3.0 45.5 1.0
OE2 B:GLU85 3.2 51.5 1.0
N B:TRP84 3.3 38.6 1.0
CA B:ARG83 3.8 37.5 1.0
C B:ARG83 4.0 39.2 1.0
CB B:TRP84 4.1 38.3 1.0
CB B:ARG83 4.1 38.8 1.0
NE2 B:HIS112 4.1 33.0 1.0
CG B:ARG83 4.2 43.8 1.0
CA B:TRP84 4.3 38.6 1.0
CD B:GLU85 4.4 66.5 1.0
CD2 B:HIS112 4.4 29.3 1.0
O B:HOH297 4.5 52.6 1.0
OE1 B:GLU85 4.8 69.8 1.0
N B:ARG83 5.0 38.0 1.0

Chlorine binding site 6 out of 6 in 1z85

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Chlorine binding site 6 out of 6 in the Crystal Structure of A Predicted Rna Methyltransferase (TM1380) From Thermotoga Maritima MSB8 at 2.12 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of A Predicted Rna Methyltransferase (TM1380) From Thermotoga Maritima MSB8 at 2.12 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl226

b:43.0
occ:1.00
 NZ B:LYS118 3.0 62.7 1.0
N B:SER115 3.1 36.4 1.0
CB B:SER115 3.6 36.4 1.0
CA B:ILE114 3.8 36.7 1.0
CD B:LYS118 3.9 52.2 1.0
C B:ILE114 3.9 39.2 1.0
CA B:SER115 3.9 37.0 1.0
CE B:LYS118 3.9 67.1 1.0
CG1 B:ILE114 4.3 39.6 1.0
O B:GLU113 4.4 37.0 1.0
CE3 B:TRP84 4.4 39.2 1.0
CZ3 B:TRP84 4.4 39.8 1.0
CB B:LYS118 4.4 47.7 1.0
O B:SER115 4.6 39.2 1.0
CB B:ILE114 4.7 35.3 1.0
CG B:LYS118 4.7 46.9 1.0
C B:SER115 4.8 40.8 1.0
N B:ILE114 4.8 35.4 1.0
OG B:SER115 5.0 40.6 1.0
C B:GLU113 5.0 36.9 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Jul 20 04:36:05 2024

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