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Chlorine in PDB 1zmk: Crystal Structure of Human Alpha-Defensin-2 (Variant GLY16-> D-Ala), P 42 21 2 Space Group

Protein crystallography data

The structure of Crystal Structure of Human Alpha-Defensin-2 (Variant GLY16-> D-Ala), P 42 21 2 Space Group, PDB code: 1zmk was solved by J.Lubkowski, A.Prahl, W.Lu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.47 / 1.30
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 47.148, 47.148, 50.643, 90.00, 90.00, 90.00
R / Rfree (%) 16 / 17.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human Alpha-Defensin-2 (Variant GLY16-> D-Ala), P 42 21 2 Space Group (pdb code 1zmk). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Human Alpha-Defensin-2 (Variant GLY16-> D-Ala), P 42 21 2 Space Group, PDB code: 1zmk:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 1zmk

Go back to Chlorine Binding Sites List in 1zmk
Chlorine binding site 1 out of 2 in the Crystal Structure of Human Alpha-Defensin-2 (Variant GLY16-> D-Ala), P 42 21 2 Space Group


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Alpha-Defensin-2 (Variant GLY16-> D-Ala), P 42 21 2 Space Group within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl101

b:15.2
occ:1.00
N A:CYS1 2.0 18.7 1.0
N B:CYS1 2.1 16.4 1.0
O A:CYS1 2.2 19.7 1.0
O B:CYS1 2.2 16.1 1.0
O B:HOH223 2.3 43.4 1.0
C A:CYS1 2.9 16.4 1.0
C B:CYS1 2.9 15.3 1.0
CA A:CYS1 2.9 17.4 1.0
CA B:CYS1 2.9 15.8 1.0
CB B:CYS1 3.6 16.0 1.0
CB A:CYS1 3.8 18.8 1.0
O B:HOH224 4.0 24.3 0.5
CZ A:TYR2 4.1 25.4 1.0
N A:TYR2 4.2 16.8 1.0
CE1 A:TYR2 4.2 25.2 1.0
N B:TYR2 4.2 14.9 1.0
CE2 A:TYR2 4.4 26.2 1.0
CD1 A:TYR2 4.5 25.0 1.0
OH A:TYR2 4.5 27.3 1.0
SG B:CYS1 4.6 22.6 1.0
CD2 A:TYR2 4.6 26.2 1.0
O A:HOH133 4.7 25.0 0.5
CG A:TYR2 4.7 23.9 1.0
SG A:CYS1 4.9 20.6 1.0
CA A:TYR2 5.0 16.7 1.0
CA B:TYR2 5.0 15.1 1.0

Chlorine binding site 2 out of 2 in 1zmk

Go back to Chlorine Binding Sites List in 1zmk
Chlorine binding site 2 out of 2 in the Crystal Structure of Human Alpha-Defensin-2 (Variant GLY16-> D-Ala), P 42 21 2 Space Group


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Human Alpha-Defensin-2 (Variant GLY16-> D-Ala), P 42 21 2 Space Group within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl102

b:10.3
occ:0.25
O B:HOH218 3.1 11.3 1.0
CG B:ARG23 3.8 10.9 1.0
O B:GLY22 4.3 13.4 1.0
CD B:ARG23 4.5 11.5 1.0
CB B:ARG23 4.6 11.0 1.0
CA B:ARG23 4.6 11.0 1.0
NE B:ARG23 4.7 11.1 1.0

Reference:

C.Xie, A.Prahl, B.Ericksen, Z.Wu, P.Zeng, X.Li, W.Y.Lu, J.Lubkowski, W.Lu. Reconstruction of the Conserved Beta-Bulge in Mammalian Defensins Using D-Amino Acids. J.Biol.Chem. V. 280 32921 2005.
ISSN: ISSN 0021-9258
PubMed: 15894545
DOI: 10.1074/JBC.M503084200
Page generated: Sat Dec 12 08:57:12 2020

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