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Chlorine in PDB 2ash: Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution

Enzymatic activity of Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution

All present enzymatic activity of Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution:
2.4.2.29;

Protein crystallography data

The structure of Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution, PDB code: 2ash was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 51.70 / 1.90
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 169.467, 99.422, 124.163, 90.00, 123.80, 90.00
R / Rfree (%) 19.3 / 22.9

Other elements in 2ash:

The structure of Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution (pdb code 2ash). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution, PDB code: 2ash:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 2ash

Go back to Chlorine Binding Sites List in 2ash
Chlorine binding site 1 out of 5 in the Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:22.9
occ:1.00
 O B:HOH529 2.8 26.5 1.0
O A:HOH421 2.8 39.4 1.0
O A:HOH515 2.9 8.9 1.0
N A:VAL321 3.1 26.9 1.0
CB A:VAL321 3.7 26.4 1.0
CG2 A:VAL321 3.8 26.8 1.0
CA A:GLU320 3.8 26.9 1.0
CD B:LYS39 3.8 30.4 1.0
C A:GLU320 4.0 26.9 1.0
CA A:VAL321 4.0 26.0 1.0
CG B:LYS39 4.0 28.5 1.0
O A:GLY319 4.1 28.9 1.0
OE1 A:GLU320 4.3 42.8 1.0
CB B:LYS39 4.3 26.3 1.0
CD A:GLU320 4.4 38.4 1.0
CD2 B:LEU40 4.4 25.2 1.0
CE B:LYS39 4.5 33.7 1.0
CB A:GLU320 4.5 26.4 1.0
OE2 A:GLU320 4.6 39.1 1.0
N A:LEU322 4.8 24.4 1.0
N A:GLU320 4.8 27.3 1.0
CA B:LYS39 4.9 25.5 1.0
C A:GLY319 4.9 27.7 1.0
O B:HOH473 4.9 20.2 1.0
NZ B:LYS39 4.9 37.7 1.0
C A:VAL321 4.9 25.6 1.0
CG B:LEU40 4.9 26.4 1.0
CG A:GLU320 4.9 30.4 1.0
N B:LEU40 5.0 25.0 1.0

Chlorine binding site 2 out of 5 in 2ash

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Chlorine binding site 2 out of 5 in the Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:19.1
occ:1.00
 O A:HOH553 2.9 43.2 1.0
NH2 C:ARG309 3.0 34.9 1.0
O C:HOH412 3.0 13.3 1.0
O A:TYR287 3.1 22.0 1.0
N A:ARG290 3.2 24.8 1.0
C A:TYR287 3.5 24.1 1.0
N A:SER291 3.6 24.6 1.0
N A:LYS289 3.6 26.3 1.0
C A:ARG290 3.7 25.4 1.0
CA A:ARG290 3.7 25.8 1.0
CB A:ARG290 3.8 25.8 0.5
C A:ASN288 3.8 26.0 1.0
CG C:GLU293 3.8 25.7 1.0
CB A:ARG290 3.8 25.3 0.5
O A:SER286 3.9 28.2 1.0
N A:ASN288 4.0 24.3 1.0
CA A:ASN288 4.1 25.0 1.0
CA A:TYR287 4.2 25.0 1.0
CZ C:ARG309 4.2 38.6 1.0
C A:LYS289 4.3 25.4 1.0
CA A:SER291 4.3 25.0 1.0
CB A:SER291 4.4 24.6 1.0
O A:ASN288 4.4 26.1 1.0
CA A:LYS289 4.4 26.3 1.0
O A:ARG290 4.5 27.1 1.0
CB C:GLU293 4.5 25.0 1.0
CG A:ARG290 4.6 28.4 0.5
NH1 C:ARG309 4.7 39.4 1.0
CB A:LYS289 4.8 25.9 1.0
CD C:GLU293 4.8 29.7 1.0
CG A:ARG290 4.8 26.8 0.5
OG C:SER291 4.9 23.1 1.0
C A:SER286 4.9 26.7 1.0
O C:HOH490 4.9 25.6 1.0

Chlorine binding site 3 out of 5 in 2ash

Go back to Chlorine Binding Sites List in 2ash
Chlorine binding site 3 out of 5 in the Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl401

b:17.8
occ:1.00
 O C:HOH495 2.8 32.8 1.0
N C:ARG290 3.1 25.0 1.0
O A:HOH555 3.1 13.6 1.0
O C:TYR287 3.3 23.8 1.0
NH1 A:ARG309 3.3 31.5 1.0
C C:TYR287 3.5 24.6 1.0
N C:SER291 3.6 24.7 1.0
CA C:ARG290 3.7 25.7 1.0
CB C:ARG290 3.7 26.2 1.0
C C:ARG290 3.7 25.7 1.0
N C:LYS289 3.7 25.1 1.0
CG A:GLU293 3.8 29.1 1.0
C C:ASN288 3.9 25.0 1.0
O C:SER286 3.9 26.9 1.0
N C:ASN288 4.0 23.9 1.0
CA C:TYR287 4.1 24.5 1.0
C C:LYS289 4.2 23.9 1.0
CA C:ASN288 4.2 24.6 1.0
CA C:SER291 4.3 24.5 1.0
CZ A:ARG309 4.4 29.8 1.0
CB C:SER291 4.4 24.8 1.0
O C:ASN288 4.4 24.2 1.0
CA C:LYS289 4.4 25.1 1.0
NH2 A:ARG309 4.5 29.6 1.0
O C:ARG290 4.5 25.2 1.0
CB A:GLU293 4.5 27.1 1.0
CG C:ARG290 4.6 30.9 1.0
O A:HOH543 4.7 32.0 1.0
CB C:LYS289 4.7 24.6 1.0
CD A:GLU293 4.9 35.5 1.0
O A:HOH501 4.9 21.8 1.0
OG A:SER291 4.9 24.2 1.0
C C:SER286 4.9 25.5 1.0

Chlorine binding site 4 out of 5 in 2ash

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Chlorine binding site 4 out of 5 in the Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl402

b:34.9
occ:1.00
 O C:HOH433 2.8 12.8 1.0
NH2 C:ARG270 3.3 30.9 1.0
CB C:VAL263 3.8 29.8 1.0
CG1 C:VAL263 4.0 30.9 1.0
O C:HOH471 4.2 35.2 1.0
CZ C:ARG270 4.3 28.7 1.0
CE C:LYS39 4.3 36.9 1.0
CB C:ARG267 4.3 28.0 1.0
NH1 C:ARG270 4.3 26.9 1.0
CG2 C:VAL263 4.4 30.9 1.0
CD C:ARG267 4.4 31.5 1.0
CG C:ARG267 4.6 30.2 1.0
CD C:LYS39 4.7 34.3 1.0
O C:HOH461 4.7 15.5 1.0
CA C:ARG267 5.0 27.7 1.0

Chlorine binding site 5 out of 5 in 2ash

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Chlorine binding site 5 out of 5 in the Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl401

b:26.4
occ:1.00
 O C:HOH455 2.6 24.5 1.0
O D:HOH510 2.8 11.2 1.0
N D:VAL321 3.0 24.2 1.0
CB D:VAL321 3.7 24.8 1.0
CA D:GLU320 3.8 25.6 1.0
CG2 D:VAL321 3.8 25.8 1.0
CD C:LYS39 3.8 34.3 1.0
CA D:VAL321 3.9 24.0 1.0
C D:GLU320 3.9 24.8 1.0
OE1 D:GLU320 4.1 35.2 1.0
CG C:LYS39 4.1 31.1 1.0
O D:GLY319 4.1 28.0 1.0
CB C:LYS39 4.2 27.6 1.0
CD2 C:LEU40 4.3 19.0 1.0
CD D:GLU320 4.3 32.2 1.0
CB D:GLU320 4.5 26.3 1.0
N D:LEU322 4.6 22.9 1.0
CE C:LYS39 4.6 36.9 1.0
OE2 D:GLU320 4.7 31.0 1.0
C D:VAL321 4.8 23.8 1.0
N D:GLU320 4.8 26.7 1.0
CA C:LYS39 4.8 26.7 1.0
O C:HOH425 4.8 18.8 1.0
CG D:GLU320 4.8 26.2 1.0
NZ C:LYS39 4.9 40.0 1.0
C D:GLY319 4.9 27.0 1.0
CG C:LEU40 5.0 23.2 1.0
N C:LEU40 5.0 26.0 1.0
CG1 D:VAL321 5.0 22.3 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Jul 20 05:22:38 2024

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