Atomistry » Chlorine » PDB 2ajf-2axw » 2ash
Atomistry »
  Chlorine »
    PDB 2ajf-2axw »
      2ash »

Chlorine in PDB 2ash: Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution

Enzymatic activity of Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution

All present enzymatic activity of Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution:
2.4.2.29;

Protein crystallography data

The structure of Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution, PDB code: 2ash was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 51.70 / 1.90
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 169.467, 99.422, 124.163, 90.00, 123.80, 90.00
R / Rfree (%) 19.3 / 22.9

Other elements in 2ash:

The structure of Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution (pdb code 2ash). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution, PDB code: 2ash:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 2ash

Go back to Chlorine Binding Sites List in 2ash
Chlorine binding site 1 out of 5 in the Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:22.9
occ:1.00
 O B:HOH529 2.8 26.5 1.0
O A:HOH421 2.8 39.4 1.0
O A:HOH515 2.9 8.9 1.0
N A:VAL321 3.1 26.9 1.0
CB A:VAL321 3.7 26.4 1.0
CG2 A:VAL321 3.8 26.8 1.0
CA A:GLU320 3.8 26.9 1.0
CD B:LYS39 3.8 30.4 1.0
C A:GLU320 4.0 26.9 1.0
CA A:VAL321 4.0 26.0 1.0
CG B:LYS39 4.0 28.5 1.0
O A:GLY319 4.1 28.9 1.0
OE1 A:GLU320 4.3 42.8 1.0
CB B:LYS39 4.3 26.3 1.0
CD A:GLU320 4.4 38.4 1.0
CD2 B:LEU40 4.4 25.2 1.0
CE B:LYS39 4.5 33.7 1.0
CB A:GLU320 4.5 26.4 1.0
OE2 A:GLU320 4.6 39.1 1.0
N A:LEU322 4.8 24.4 1.0
N A:GLU320 4.8 27.3 1.0
CA B:LYS39 4.9 25.5 1.0
C A:GLY319 4.9 27.7 1.0
O B:HOH473 4.9 20.2 1.0
NZ B:LYS39 4.9 37.7 1.0
C A:VAL321 4.9 25.6 1.0
CG B:LEU40 4.9 26.4 1.0
CG A:GLU320 4.9 30.4 1.0
N B:LEU40 5.0 25.0 1.0

Chlorine binding site 2 out of 5 in 2ash

Go back to Chlorine Binding Sites List in 2ash
Chlorine binding site 2 out of 5 in the Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:19.1
occ:1.00
 O A:HOH553 2.9 43.2 1.0
NH2 C:ARG309 3.0 34.9 1.0
O C:HOH412 3.0 13.3 1.0
O A:TYR287 3.1 22.0 1.0
N A:ARG290 3.2 24.8 1.0
C A:TYR287 3.5 24.1 1.0
N A:SER291 3.6 24.6 1.0
N A:LYS289 3.6 26.3 1.0
C A:ARG290 3.7 25.4 1.0
CA A:ARG290 3.7 25.8 1.0
CB A:ARG290 3.8 25.8 0.5
C A:ASN288 3.8 26.0 1.0
CG C:GLU293 3.8 25.7 1.0
CB A:ARG290 3.8 25.3 0.5
O A:SER286 3.9 28.2 1.0
N A:ASN288 4.0 24.3 1.0
CA A:ASN288 4.1 25.0 1.0
CA A:TYR287 4.2 25.0 1.0
CZ C:ARG309 4.2 38.6 1.0
C A:LYS289 4.3 25.4 1.0
CA A:SER291 4.3 25.0 1.0
CB A:SER291 4.4 24.6 1.0
O A:ASN288 4.4 26.1 1.0
CA A:LYS289 4.4 26.3 1.0
O A:ARG290 4.5 27.1 1.0
CB C:GLU293 4.5 25.0 1.0
CG A:ARG290 4.6 28.4 0.5
NH1 C:ARG309 4.7 39.4 1.0
CB A:LYS289 4.8 25.9 1.0
CD C:GLU293 4.8 29.7 1.0
CG A:ARG290 4.8 26.8 0.5
OG C:SER291 4.9 23.1 1.0
C A:SER286 4.9 26.7 1.0
O C:HOH490 4.9 25.6 1.0

Chlorine binding site 3 out of 5 in 2ash

Go back to Chlorine Binding Sites List in 2ash
Chlorine binding site 3 out of 5 in the Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl401

b:17.8
occ:1.00
 O C:HOH495 2.8 32.8 1.0
N C:ARG290 3.1 25.0 1.0
O A:HOH555 3.1 13.6 1.0
O C:TYR287 3.3 23.8 1.0
NH1 A:ARG309 3.3 31.5 1.0
C C:TYR287 3.5 24.6 1.0
N C:SER291 3.6 24.7 1.0
CA C:ARG290 3.7 25.7 1.0
CB C:ARG290 3.7 26.2 1.0
C C:ARG290 3.7 25.7 1.0
N C:LYS289 3.7 25.1 1.0
CG A:GLU293 3.8 29.1 1.0
C C:ASN288 3.9 25.0 1.0
O C:SER286 3.9 26.9 1.0
N C:ASN288 4.0 23.9 1.0
CA C:TYR287 4.1 24.5 1.0
C C:LYS289 4.2 23.9 1.0
CA C:ASN288 4.2 24.6 1.0
CA C:SER291 4.3 24.5 1.0
CZ A:ARG309 4.4 29.8 1.0
CB C:SER291 4.4 24.8 1.0
O C:ASN288 4.4 24.2 1.0
CA C:LYS289 4.4 25.1 1.0
NH2 A:ARG309 4.5 29.6 1.0
O C:ARG290 4.5 25.2 1.0
CB A:GLU293 4.5 27.1 1.0
CG C:ARG290 4.6 30.9 1.0
O A:HOH543 4.7 32.0 1.0
CB C:LYS289 4.7 24.6 1.0
CD A:GLU293 4.9 35.5 1.0
O A:HOH501 4.9 21.8 1.0
OG A:SER291 4.9 24.2 1.0
C C:SER286 4.9 25.5 1.0

Chlorine binding site 4 out of 5 in 2ash

Go back to Chlorine Binding Sites List in 2ash
Chlorine binding site 4 out of 5 in the Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl402

b:34.9
occ:1.00
 O C:HOH433 2.8 12.8 1.0
NH2 C:ARG270 3.3 30.9 1.0
CB C:VAL263 3.8 29.8 1.0
CG1 C:VAL263 4.0 30.9 1.0
O C:HOH471 4.2 35.2 1.0
CZ C:ARG270 4.3 28.7 1.0
CE C:LYS39 4.3 36.9 1.0
CB C:ARG267 4.3 28.0 1.0
NH1 C:ARG270 4.3 26.9 1.0
CG2 C:VAL263 4.4 30.9 1.0
CD C:ARG267 4.4 31.5 1.0
CG C:ARG267 4.6 30.2 1.0
CD C:LYS39 4.7 34.3 1.0
O C:HOH461 4.7 15.5 1.0
CA C:ARG267 5.0 27.7 1.0

Chlorine binding site 5 out of 5 in 2ash

Go back to Chlorine Binding Sites List in 2ash
Chlorine binding site 5 out of 5 in the Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (TM1561) From Thermotoga Maritima at 1.90 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl401

b:26.4
occ:1.00
 O C:HOH455 2.6 24.5 1.0
O D:HOH510 2.8 11.2 1.0
N D:VAL321 3.0 24.2 1.0
CB D:VAL321 3.7 24.8 1.0
CA D:GLU320 3.8 25.6 1.0
CG2 D:VAL321 3.8 25.8 1.0
CD C:LYS39 3.8 34.3 1.0
CA D:VAL321 3.9 24.0 1.0
C D:GLU320 3.9 24.8 1.0
OE1 D:GLU320 4.1 35.2 1.0
CG C:LYS39 4.1 31.1 1.0
O D:GLY319 4.1 28.0 1.0
CB C:LYS39 4.2 27.6 1.0
CD2 C:LEU40 4.3 19.0 1.0
CD D:GLU320 4.3 32.2 1.0
CB D:GLU320 4.5 26.3 1.0
N D:LEU322 4.6 22.9 1.0
CE C:LYS39 4.6 36.9 1.0
OE2 D:GLU320 4.7 31.0 1.0
C D:VAL321 4.8 23.8 1.0
N D:GLU320 4.8 26.7 1.0
CA C:LYS39 4.8 26.7 1.0
O C:HOH425 4.8 18.8 1.0
CG D:GLU320 4.8 26.2 1.0
NZ C:LYS39 4.9 40.0 1.0
C D:GLY319 4.9 27.0 1.0
CG C:LEU40 5.0 23.2 1.0
N C:LEU40 5.0 26.0 1.0
CG1 D:VAL321 5.0 22.3 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Jul 20 05:22:38 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy