Atomistry » Chlorine » PDB 2aj4-2axi » 2av4
Atomistry »
  Chlorine »
    PDB 2aj4-2axi »
      2av4 »

Chlorine in PDB 2av4: Crystal Structure of Plasmodium Yoelii Thioredoxin-Like Protein 4A (DIM1)

Protein crystallography data

The structure of Crystal Structure of Plasmodium Yoelii Thioredoxin-Like Protein 4A (DIM1), PDB code: 2av4 was solved by A.Dong, Y.Zhao, J.Lew, Z.Alam, M.Melone, G.Wasney, M.Vedadi, I.Koeieradzki, A.M.Edwards, C.H.Arrowsmith, J.Weigelt, M.Sundstrom, A.Bochkarev, R.Hui, J.Artz, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.50 / 1.73
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 109.877, 109.877, 85.170, 90.00, 90.00, 120.00
R / Rfree (%) 20.8 / 26.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Plasmodium Yoelii Thioredoxin-Like Protein 4A (DIM1) (pdb code 2av4). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Plasmodium Yoelii Thioredoxin-Like Protein 4A (DIM1), PDB code: 2av4:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 2av4

Go back to Chlorine Binding Sites List in 2av4
Chlorine binding site 1 out of 4 in the Crystal Structure of Plasmodium Yoelii Thioredoxin-Like Protein 4A (DIM1)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Plasmodium Yoelii Thioredoxin-Like Protein 4A (DIM1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1000

b:20.8
occ:1.00
O A:HOH1181 3.1 32.8 1.0
O A:HOH1124 3.1 35.9 1.0
N A:TRP30 3.3 12.8 1.0
N A:GLY29 3.7 13.0 1.0
O A:HOH1049 3.7 20.9 1.0
CB A:TRP30 3.7 14.2 1.0
CB A:SER28 3.9 13.0 1.0
CA A:TRP30 4.1 13.7 1.0
CA A:GLY29 4.2 12.6 1.0
C A:GLY29 4.2 12.7 1.0
OG A:SER28 4.4 12.2 1.0
C A:SER28 4.4 12.5 1.0
OD2 A:ASP86 4.5 17.7 1.0
O A:HOH1184 4.5 43.7 1.0
CA A:SER28 4.6 13.1 1.0
O A:HOH1176 5.0 44.5 1.0

Chlorine binding site 2 out of 4 in 2av4

Go back to Chlorine Binding Sites List in 2av4
Chlorine binding site 2 out of 4 in the Crystal Structure of Plasmodium Yoelii Thioredoxin-Like Protein 4A (DIM1)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Plasmodium Yoelii Thioredoxin-Like Protein 4A (DIM1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1001

b:13.0
occ:0.50
O A:HOH1071 2.9 26.6 1.0
OG A:SER28 3.1 12.2 1.0
CB A:SER28 3.7 13.0 1.0
CB A:ASN27 3.9 15.3 1.0
CB A:ALA31 3.9 12.4 1.0
C A:ASN27 3.9 14.0 1.0
N A:SER28 4.0 13.4 1.0
N A:ASN27 4.1 14.8 1.0
CA A:ASN27 4.2 15.3 1.0
O A:ASN27 4.3 14.8 1.0
CA A:SER28 4.5 13.1 1.0
CG A:ASN27 5.0 20.5 1.0
OD1 A:ASN27 5.0 25.8 1.0

Chlorine binding site 3 out of 4 in 2av4

Go back to Chlorine Binding Sites List in 2av4
Chlorine binding site 3 out of 4 in the Crystal Structure of Plasmodium Yoelii Thioredoxin-Like Protein 4A (DIM1)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Plasmodium Yoelii Thioredoxin-Like Protein 4A (DIM1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1002

b:31.2
occ:1.00
N A:GLY146 3.1 19.1 1.0
N A:LEU147 3.6 17.7 1.0
CG A:ARG145 3.9 23.3 1.0
CA A:ARG145 3.9 18.2 1.0
CA A:GLY146 4.0 18.7 1.0
C A:ARG145 4.0 18.1 1.0
CB A:ARG145 4.0 19.1 1.0
O A:LEU147 4.1 20.2 1.0
C A:GLY146 4.2 18.9 1.0
CB A:LEU147 4.4 18.1 1.0
CA A:LEU147 4.5 18.6 1.0
C A:LEU147 4.8 19.0 1.0
O A:HOH1149 4.9 41.6 1.0

Chlorine binding site 4 out of 4 in 2av4

Go back to Chlorine Binding Sites List in 2av4
Chlorine binding site 4 out of 4 in the Crystal Structure of Plasmodium Yoelii Thioredoxin-Like Protein 4A (DIM1)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Plasmodium Yoelii Thioredoxin-Like Protein 4A (DIM1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1003

b:31.1
occ:1.00
O A:HOH1138 3.0 36.1 1.0
NH2 A:ARG104 3.2 17.1 1.0
O A:HOH1024 3.2 22.2 1.0
CG A:GLU41 3.8 26.6 1.0
NH2 A:ARG142 4.0 40.3 1.0
CA A:GLU41 4.0 21.5 1.0
O A:ASP40 4.1 18.9 1.0
CB A:GLU41 4.4 21.3 1.0
CZ A:ARG104 4.5 18.6 1.0
CZ A:ARG142 4.7 38.3 1.0
CD A:GLU41 4.7 27.6 1.0
C A:ASP40 4.8 19.6 1.0
NH1 A:ARG142 4.8 37.7 1.0
O A:GLU41 4.8 19.5 1.0
N A:GLU41 4.8 19.2 1.0
C A:GLU41 5.0 18.8 1.0
OH A:TYR103 5.0 14.6 1.0

Reference:

M.Vedadi, J.Lew, J.Artz, M.Amani, Y.Zhao, A.Dong, G.A.Wasney, M.Gao, T.Hills, S.Brokx, W.Qiu, S.Sharma, A.Diassiti, Z.Alam, M.Melone, A.Mulichak, A.Wernimont, J.Bray, P.Loppnau, O.Plotnikova, K.Newberry, E.Sundararajan, S.Houston, J.Walker, W.Tempel, A.Bochkarev, I.Kozieradzki, A.Edwards, C.Arrowsmith, D.Roos, K.Kain, R.Hui. Genome-Scale Protein Expression and Structural Biology of Plasmodium Falciparum and Related Apicomplexan Organisms. Mol.Biochem.Parasitol. V. 151 100 2007.
ISSN: ISSN 0166-6851
PubMed: 17125854
DOI: 10.1016/J.MOLBIOPARA.2006.10.011
Page generated: Sat Dec 12 08:59:17 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy