Chlorine in PDB 2avf: Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes
Enzymatic activity of Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes
All present enzymatic activity of Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes:
1.7.2.1;
Protein crystallography data
The structure of Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes, PDB code: 2avf
was solved by
H.T.Li,
T.Chang,
W.C.Chang,
C.J.Chen,
M.Y.Liu,
L.L.Gui,
J.P.Zhang,
X.M.An,
W.R.Chang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
20.00 /
2.60
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
85.783,
111.072,
122.884,
90.00,
101.67,
90.00
|
R / Rfree (%)
|
18.2 /
21.7
|
Other elements in 2avf:
The structure of Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes
(pdb code 2avf). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the
Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes, PDB code: 2avf:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
Chlorine binding site 1 out
of 6 in 2avf
Go back to
Chlorine Binding Sites List in 2avf
Chlorine binding site 1 out
of 6 in the Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl601
b:27.0
occ:1.00
|
CU
|
A:CU502
|
2.2
|
16.3
|
1.0
|
NE2
|
A:HIS100
|
3.4
|
21.0
|
1.0
|
NE2
|
B:HIS255
|
3.4
|
17.5
|
1.0
|
CD2
|
B:HIS255
|
3.5
|
17.6
|
1.0
|
NE2
|
B:HIS306
|
3.5
|
20.1
|
1.0
|
NE2
|
A:HIS135
|
3.5
|
14.9
|
1.0
|
CG1
|
B:ILE257
|
3.6
|
20.3
|
1.0
|
OD2
|
A:ASP98
|
3.7
|
42.2
|
1.0
|
CE1
|
A:HIS135
|
3.7
|
16.6
|
1.0
|
CD1
|
B:ILE257
|
3.8
|
20.2
|
1.0
|
CG2
|
B:ILE257
|
3.9
|
17.4
|
1.0
|
CD2
|
A:HIS100
|
4.0
|
22.3
|
1.0
|
O
|
B:HOH612
|
4.0
|
20.8
|
1.0
|
CD2
|
B:HIS306
|
4.1
|
21.6
|
1.0
|
CG
|
A:ASP98
|
4.1
|
39.3
|
1.0
|
OD1
|
A:ASP98
|
4.1
|
40.0
|
1.0
|
CB
|
B:ILE257
|
4.2
|
19.6
|
1.0
|
CA
|
B:ILE257
|
4.5
|
21.1
|
1.0
|
CE1
|
B:HIS255
|
4.5
|
19.4
|
1.0
|
CE1
|
A:HIS100
|
4.5
|
21.9
|
1.0
|
CG
|
B:HIS255
|
4.6
|
19.2
|
1.0
|
CE1
|
B:HIS306
|
4.6
|
21.3
|
1.0
|
CD2
|
A:HIS135
|
4.8
|
16.0
|
1.0
|
|
Chlorine binding site 2 out
of 6 in 2avf
Go back to
Chlorine Binding Sites List in 2avf
Chlorine binding site 2 out
of 6 in the Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl602
b:29.4
occ:1.00
|
CU
|
B:CU502
|
2.2
|
14.3
|
1.0
|
NE2
|
B:HIS100
|
3.4
|
15.8
|
1.0
|
NE2
|
B:HIS135
|
3.6
|
20.9
|
1.0
|
CG1
|
C:ILE257
|
3.6
|
18.0
|
1.0
|
NE2
|
C:HIS255
|
3.6
|
23.0
|
1.0
|
CD2
|
C:HIS255
|
3.7
|
21.8
|
1.0
|
NE2
|
C:HIS306
|
3.8
|
17.4
|
1.0
|
CD1
|
C:ILE257
|
3.8
|
17.5
|
1.0
|
CG2
|
C:ILE257
|
3.9
|
17.4
|
1.0
|
CE1
|
B:HIS135
|
4.0
|
19.9
|
1.0
|
OD2
|
B:ASP98
|
4.0
|
45.6
|
1.0
|
CD2
|
B:HIS100
|
4.0
|
17.6
|
1.0
|
O
|
C:HOH612
|
4.1
|
14.6
|
1.0
|
CB
|
C:ILE257
|
4.2
|
18.9
|
1.0
|
CD2
|
C:HIS306
|
4.3
|
17.9
|
1.0
|
OD1
|
B:ASP98
|
4.3
|
42.9
|
1.0
|
CG
|
B:ASP98
|
4.3
|
43.4
|
1.0
|
CA
|
C:ILE257
|
4.5
|
20.3
|
1.0
|
CE1
|
B:HIS100
|
4.5
|
15.4
|
1.0
|
CE1
|
C:HIS255
|
4.6
|
22.1
|
1.0
|
CG
|
C:HIS255
|
4.7
|
20.6
|
1.0
|
CD2
|
B:HIS135
|
4.8
|
20.6
|
1.0
|
CE1
|
C:HIS306
|
4.9
|
17.9
|
1.0
|
|
Chlorine binding site 3 out
of 6 in 2avf
Go back to
Chlorine Binding Sites List in 2avf
Chlorine binding site 3 out
of 6 in the Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl603
b:26.7
occ:1.00
|
CU
|
C:CU502
|
2.2
|
16.8
|
1.0
|
OD2
|
C:ASP98
|
3.2
|
34.7
|
1.0
|
NE2
|
C:HIS135
|
3.4
|
13.5
|
1.0
|
NE2
|
C:HIS100
|
3.5
|
14.8
|
1.0
|
NE2
|
A:HIS306
|
3.5
|
12.0
|
1.0
|
NE2
|
A:HIS255
|
3.5
|
20.2
|
1.0
|
CD2
|
A:HIS255
|
3.6
|
20.6
|
1.0
|
CG1
|
A:ILE257
|
3.6
|
21.7
|
1.0
|
CE1
|
C:HIS135
|
3.8
|
13.3
|
1.0
|
CD1
|
A:ILE257
|
3.8
|
20.7
|
1.0
|
O
|
A:HOH540
|
3.9
|
18.8
|
1.0
|
CG
|
C:ASP98
|
4.0
|
33.5
|
1.0
|
CD2
|
A:HIS306
|
4.0
|
13.7
|
1.0
|
CD2
|
C:HIS100
|
4.1
|
16.6
|
1.0
|
CG2
|
A:ILE257
|
4.2
|
18.8
|
1.0
|
OD1
|
C:ASP98
|
4.3
|
34.4
|
1.0
|
CB
|
A:ILE257
|
4.3
|
21.2
|
1.0
|
CE1
|
C:HIS100
|
4.5
|
15.1
|
1.0
|
CE1
|
A:HIS255
|
4.6
|
20.6
|
1.0
|
CD2
|
C:HIS135
|
4.6
|
12.2
|
1.0
|
CE1
|
A:HIS306
|
4.7
|
13.7
|
1.0
|
CA
|
A:ILE257
|
4.7
|
21.8
|
1.0
|
CG
|
A:HIS255
|
4.7
|
21.4
|
1.0
|
|
Chlorine binding site 4 out
of 6 in 2avf
Go back to
Chlorine Binding Sites List in 2avf
Chlorine binding site 4 out
of 6 in the Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl604
b:31.5
occ:1.00
|
CU
|
D:CU502
|
2.0
|
17.1
|
1.0
|
NE2
|
E:HIS306
|
3.2
|
16.5
|
1.0
|
NE2
|
D:HIS100
|
3.3
|
27.5
|
1.0
|
NE2
|
D:HIS135
|
3.5
|
25.3
|
1.0
|
CD2
|
E:HIS255
|
3.7
|
26.5
|
1.0
|
NE2
|
E:HIS255
|
3.7
|
27.6
|
1.0
|
CD2
|
E:HIS306
|
3.7
|
18.4
|
1.0
|
OD2
|
D:ASP98
|
3.8
|
48.2
|
1.0
|
CG1
|
E:ILE257
|
3.8
|
30.8
|
1.0
|
CE1
|
D:HIS135
|
3.8
|
25.2
|
1.0
|
CD1
|
E:ILE257
|
4.0
|
30.6
|
1.0
|
CD2
|
D:HIS100
|
4.0
|
26.9
|
1.0
|
O
|
E:HOH528
|
4.3
|
23.4
|
1.0
|
CE1
|
D:HIS100
|
4.4
|
26.9
|
1.0
|
CE1
|
E:HIS306
|
4.4
|
14.1
|
1.0
|
CG2
|
E:ILE257
|
4.4
|
30.3
|
1.0
|
CE1
|
E:HIS255
|
4.5
|
28.4
|
1.0
|
CG
|
E:HIS255
|
4.5
|
24.8
|
1.0
|
CB
|
E:ILE257
|
4.6
|
31.0
|
1.0
|
CD2
|
D:HIS135
|
4.8
|
24.6
|
1.0
|
CG
|
D:ASP98
|
4.8
|
47.9
|
1.0
|
CA
|
E:ILE257
|
4.9
|
30.8
|
1.0
|
ND1
|
E:HIS255
|
5.0
|
27.9
|
1.0
|
|
Chlorine binding site 5 out
of 6 in 2avf
Go back to
Chlorine Binding Sites List in 2avf
Chlorine binding site 5 out
of 6 in the Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cl605
b:22.1
occ:1.00
|
CU
|
E:CU502
|
2.1
|
16.3
|
1.0
|
NE2
|
E:HIS100
|
3.1
|
16.8
|
1.0
|
NE2
|
F:HIS306
|
3.4
|
13.0
|
1.0
|
CD2
|
F:HIS255
|
3.5
|
17.6
|
1.0
|
NE2
|
F:HIS255
|
3.5
|
19.4
|
1.0
|
NE2
|
E:HIS135
|
3.6
|
14.8
|
1.0
|
CG1
|
F:ILE257
|
3.6
|
21.6
|
1.0
|
CD2
|
E:HIS100
|
3.7
|
15.8
|
1.0
|
CE1
|
E:HIS135
|
3.9
|
16.2
|
1.0
|
CD1
|
F:ILE257
|
3.9
|
20.3
|
1.0
|
CD2
|
F:HIS306
|
3.9
|
13.9
|
1.0
|
OD2
|
E:ASP98
|
3.9
|
46.6
|
1.0
|
O
|
F:HOH614
|
3.9
|
22.5
|
1.0
|
CG2
|
F:ILE257
|
3.9
|
17.8
|
1.0
|
OD1
|
E:ASP98
|
4.1
|
43.4
|
1.0
|
CG
|
E:ASP98
|
4.2
|
42.8
|
1.0
|
CE1
|
E:HIS100
|
4.2
|
14.9
|
1.0
|
CB
|
F:ILE257
|
4.2
|
20.8
|
1.0
|
CG
|
F:HIS255
|
4.5
|
17.7
|
1.0
|
CE1
|
F:HIS255
|
4.5
|
16.9
|
1.0
|
CA
|
F:ILE257
|
4.5
|
20.6
|
1.0
|
CE1
|
F:HIS306
|
4.6
|
15.0
|
1.0
|
CD2
|
E:HIS135
|
4.8
|
14.0
|
1.0
|
CG
|
E:HIS100
|
4.9
|
15.8
|
1.0
|
ND1
|
F:HIS255
|
5.0
|
18.9
|
1.0
|
|
Chlorine binding site 6 out
of 6 in 2avf
Go back to
Chlorine Binding Sites List in 2avf
Chlorine binding site 6 out
of 6 in the Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cl606
b:28.9
occ:1.00
|
CU
|
F:CU502
|
2.1
|
12.2
|
1.0
|
OD2
|
F:ASP98
|
3.2
|
34.2
|
1.0
|
NE2
|
F:HIS100
|
3.3
|
15.3
|
1.0
|
NE2
|
D:HIS255
|
3.5
|
14.6
|
1.0
|
NE2
|
D:HIS306
|
3.5
|
12.3
|
1.0
|
CD2
|
D:HIS255
|
3.6
|
14.3
|
1.0
|
NE2
|
F:HIS135
|
3.6
|
17.8
|
1.0
|
CG1
|
D:ILE257
|
3.6
|
20.5
|
1.0
|
O
|
D:HOH607
|
3.9
|
16.0
|
1.0
|
CD2
|
F:HIS100
|
3.9
|
14.1
|
1.0
|
CE1
|
F:HIS135
|
3.9
|
19.4
|
1.0
|
CD1
|
D:ILE257
|
3.9
|
17.2
|
1.0
|
CD2
|
D:HIS306
|
4.0
|
16.1
|
1.0
|
CG2
|
D:ILE257
|
4.0
|
17.5
|
1.0
|
CB
|
D:ILE257
|
4.3
|
20.6
|
1.0
|
CG
|
F:ASP98
|
4.3
|
32.2
|
1.0
|
CE1
|
F:HIS100
|
4.3
|
17.1
|
1.0
|
CE1
|
D:HIS255
|
4.4
|
11.0
|
1.0
|
CA
|
D:ILE257
|
4.5
|
21.1
|
1.0
|
CG
|
D:HIS255
|
4.6
|
14.6
|
1.0
|
OD1
|
F:ASP98
|
4.7
|
33.4
|
1.0
|
CE1
|
D:HIS306
|
4.7
|
16.6
|
1.0
|
CD2
|
F:HIS135
|
4.8
|
18.3
|
1.0
|
O
|
F:GLY107
|
4.8
|
59.9
|
1.0
|
|
Reference:
H.T.Li,
T.Chang,
W.C.Chang,
C.J.Chen,
M.Y.Liu,
L.L.Gui,
J.P.Zhang,
X.M.An,
W.R.Chang.
Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes Biochem.Biophys.Res.Commun. V. 338 1935 2005.
ISSN: ISSN 0006-291X
PubMed: 16293231
DOI: 10.1016/J.BBRC.2005.09.199
Page generated: Sat Jul 20 05:26:52 2024
|