Atomistry » Chlorine » PDB 2aj4-2axi » 2avf
Atomistry »
  Chlorine »
    PDB 2aj4-2axi »
      2avf »

Chlorine in PDB 2avf: Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes

Enzymatic activity of Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes

All present enzymatic activity of Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes:
1.7.2.1;

Protein crystallography data

The structure of Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes, PDB code: 2avf was solved by H.T.Li, T.Chang, W.C.Chang, C.J.Chen, M.Y.Liu, L.L.Gui, J.P.Zhang, X.M.An, W.R.Chang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 85.783, 111.072, 122.884, 90.00, 101.67, 90.00
R / Rfree (%) 18.2 / 21.7

Other elements in 2avf:

The structure of Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes also contains other interesting chemical elements:

Copper (Cu) 12 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes (pdb code 2avf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes, PDB code: 2avf:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 2avf

Go back to Chlorine Binding Sites List in 2avf
Chlorine binding site 1 out of 6 in the Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl601

b:27.0
occ:1.00
CU A:CU502 2.2 16.3 1.0
NE2 A:HIS100 3.4 21.0 1.0
NE2 B:HIS255 3.4 17.5 1.0
CD2 B:HIS255 3.5 17.6 1.0
NE2 B:HIS306 3.5 20.1 1.0
NE2 A:HIS135 3.5 14.9 1.0
CG1 B:ILE257 3.6 20.3 1.0
OD2 A:ASP98 3.7 42.2 1.0
CE1 A:HIS135 3.7 16.6 1.0
CD1 B:ILE257 3.8 20.2 1.0
CG2 B:ILE257 3.9 17.4 1.0
CD2 A:HIS100 4.0 22.3 1.0
O B:HOH612 4.0 20.8 1.0
CD2 B:HIS306 4.1 21.6 1.0
CG A:ASP98 4.1 39.3 1.0
OD1 A:ASP98 4.1 40.0 1.0
CB B:ILE257 4.2 19.6 1.0
CA B:ILE257 4.5 21.1 1.0
CE1 B:HIS255 4.5 19.4 1.0
CE1 A:HIS100 4.5 21.9 1.0
CG B:HIS255 4.6 19.2 1.0
CE1 B:HIS306 4.6 21.3 1.0
CD2 A:HIS135 4.8 16.0 1.0

Chlorine binding site 2 out of 6 in 2avf

Go back to Chlorine Binding Sites List in 2avf
Chlorine binding site 2 out of 6 in the Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl602

b:29.4
occ:1.00
CU B:CU502 2.2 14.3 1.0
NE2 B:HIS100 3.4 15.8 1.0
NE2 B:HIS135 3.6 20.9 1.0
CG1 C:ILE257 3.6 18.0 1.0
NE2 C:HIS255 3.6 23.0 1.0
CD2 C:HIS255 3.7 21.8 1.0
NE2 C:HIS306 3.8 17.4 1.0
CD1 C:ILE257 3.8 17.5 1.0
CG2 C:ILE257 3.9 17.4 1.0
CE1 B:HIS135 4.0 19.9 1.0
OD2 B:ASP98 4.0 45.6 1.0
CD2 B:HIS100 4.0 17.6 1.0
O C:HOH612 4.1 14.6 1.0
CB C:ILE257 4.2 18.9 1.0
CD2 C:HIS306 4.3 17.9 1.0
OD1 B:ASP98 4.3 42.9 1.0
CG B:ASP98 4.3 43.4 1.0
CA C:ILE257 4.5 20.3 1.0
CE1 B:HIS100 4.5 15.4 1.0
CE1 C:HIS255 4.6 22.1 1.0
CG C:HIS255 4.7 20.6 1.0
CD2 B:HIS135 4.8 20.6 1.0
CE1 C:HIS306 4.9 17.9 1.0

Chlorine binding site 3 out of 6 in 2avf

Go back to Chlorine Binding Sites List in 2avf
Chlorine binding site 3 out of 6 in the Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl603

b:26.7
occ:1.00
CU C:CU502 2.2 16.8 1.0
OD2 C:ASP98 3.2 34.7 1.0
NE2 C:HIS135 3.4 13.5 1.0
NE2 C:HIS100 3.5 14.8 1.0
NE2 A:HIS306 3.5 12.0 1.0
NE2 A:HIS255 3.5 20.2 1.0
CD2 A:HIS255 3.6 20.6 1.0
CG1 A:ILE257 3.6 21.7 1.0
CE1 C:HIS135 3.8 13.3 1.0
CD1 A:ILE257 3.8 20.7 1.0
O A:HOH540 3.9 18.8 1.0
CG C:ASP98 4.0 33.5 1.0
CD2 A:HIS306 4.0 13.7 1.0
CD2 C:HIS100 4.1 16.6 1.0
CG2 A:ILE257 4.2 18.8 1.0
OD1 C:ASP98 4.3 34.4 1.0
CB A:ILE257 4.3 21.2 1.0
CE1 C:HIS100 4.5 15.1 1.0
CE1 A:HIS255 4.6 20.6 1.0
CD2 C:HIS135 4.6 12.2 1.0
CE1 A:HIS306 4.7 13.7 1.0
CA A:ILE257 4.7 21.8 1.0
CG A:HIS255 4.7 21.4 1.0

Chlorine binding site 4 out of 6 in 2avf

Go back to Chlorine Binding Sites List in 2avf
Chlorine binding site 4 out of 6 in the Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl604

b:31.5
occ:1.00
CU D:CU502 2.0 17.1 1.0
NE2 E:HIS306 3.2 16.5 1.0
NE2 D:HIS100 3.3 27.5 1.0
NE2 D:HIS135 3.5 25.3 1.0
CD2 E:HIS255 3.7 26.5 1.0
NE2 E:HIS255 3.7 27.6 1.0
CD2 E:HIS306 3.7 18.4 1.0
OD2 D:ASP98 3.8 48.2 1.0
CG1 E:ILE257 3.8 30.8 1.0
CE1 D:HIS135 3.8 25.2 1.0
CD1 E:ILE257 4.0 30.6 1.0
CD2 D:HIS100 4.0 26.9 1.0
O E:HOH528 4.3 23.4 1.0
CE1 D:HIS100 4.4 26.9 1.0
CE1 E:HIS306 4.4 14.1 1.0
CG2 E:ILE257 4.4 30.3 1.0
CE1 E:HIS255 4.5 28.4 1.0
CG E:HIS255 4.5 24.8 1.0
CB E:ILE257 4.6 31.0 1.0
CD2 D:HIS135 4.8 24.6 1.0
CG D:ASP98 4.8 47.9 1.0
CA E:ILE257 4.9 30.8 1.0
ND1 E:HIS255 5.0 27.9 1.0

Chlorine binding site 5 out of 6 in 2avf

Go back to Chlorine Binding Sites List in 2avf
Chlorine binding site 5 out of 6 in the Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl605

b:22.1
occ:1.00
CU E:CU502 2.1 16.3 1.0
NE2 E:HIS100 3.1 16.8 1.0
NE2 F:HIS306 3.4 13.0 1.0
CD2 F:HIS255 3.5 17.6 1.0
NE2 F:HIS255 3.5 19.4 1.0
NE2 E:HIS135 3.6 14.8 1.0
CG1 F:ILE257 3.6 21.6 1.0
CD2 E:HIS100 3.7 15.8 1.0
CE1 E:HIS135 3.9 16.2 1.0
CD1 F:ILE257 3.9 20.3 1.0
CD2 F:HIS306 3.9 13.9 1.0
OD2 E:ASP98 3.9 46.6 1.0
O F:HOH614 3.9 22.5 1.0
CG2 F:ILE257 3.9 17.8 1.0
OD1 E:ASP98 4.1 43.4 1.0
CG E:ASP98 4.2 42.8 1.0
CE1 E:HIS100 4.2 14.9 1.0
CB F:ILE257 4.2 20.8 1.0
CG F:HIS255 4.5 17.7 1.0
CE1 F:HIS255 4.5 16.9 1.0
CA F:ILE257 4.5 20.6 1.0
CE1 F:HIS306 4.6 15.0 1.0
CD2 E:HIS135 4.8 14.0 1.0
CG E:HIS100 4.9 15.8 1.0
ND1 F:HIS255 5.0 18.9 1.0

Chlorine binding site 6 out of 6 in 2avf

Go back to Chlorine Binding Sites List in 2avf
Chlorine binding site 6 out of 6 in the Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl606

b:28.9
occ:1.00
CU F:CU502 2.1 12.2 1.0
OD2 F:ASP98 3.2 34.2 1.0
NE2 F:HIS100 3.3 15.3 1.0
NE2 D:HIS255 3.5 14.6 1.0
NE2 D:HIS306 3.5 12.3 1.0
CD2 D:HIS255 3.6 14.3 1.0
NE2 F:HIS135 3.6 17.8 1.0
CG1 D:ILE257 3.6 20.5 1.0
O D:HOH607 3.9 16.0 1.0
CD2 F:HIS100 3.9 14.1 1.0
CE1 F:HIS135 3.9 19.4 1.0
CD1 D:ILE257 3.9 17.2 1.0
CD2 D:HIS306 4.0 16.1 1.0
CG2 D:ILE257 4.0 17.5 1.0
CB D:ILE257 4.3 20.6 1.0
CG F:ASP98 4.3 32.2 1.0
CE1 F:HIS100 4.3 17.1 1.0
CE1 D:HIS255 4.4 11.0 1.0
CA D:ILE257 4.5 21.1 1.0
CG D:HIS255 4.6 14.6 1.0
OD1 F:ASP98 4.7 33.4 1.0
CE1 D:HIS306 4.7 16.6 1.0
CD2 F:HIS135 4.8 18.3 1.0
O F:GLY107 4.8 59.9 1.0

Reference:

H.T.Li, T.Chang, W.C.Chang, C.J.Chen, M.Y.Liu, L.L.Gui, J.P.Zhang, X.M.An, W.R.Chang. Crystal Structure of C-Terminal Desundecapeptide Nitrite Reductase From Achromobacter Cycloclastes Biochem.Biophys.Res.Commun. V. 338 1935 2005.
ISSN: ISSN 0006-291X
PubMed: 16293231
DOI: 10.1016/J.BBRC.2005.09.199
Page generated: Sat Jul 20 05:26:52 2024

Last articles

Cl in 3SW2
Cl in 3SVT
Cl in 3SVP
Cl in 3SVK
Cl in 3STG
Cl in 3SVJ
Cl in 3SVC
Cl in 3SVI
Cl in 3SUJ
Cl in 3STE
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy