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Chlorine in PDB 2b71: Plasmodium Yoelii Cyclophilin-Like Protein

Protein crystallography data

The structure of Plasmodium Yoelii Cyclophilin-Like Protein, PDB code: 2b71 was solved by A.Dong, P.Finerty, G.Wasney, M.Vedadi, J.Lew, Y.Zhao, I.Kozieradzki, M.Melone, Z.Alam, A.M.Edwards, C.H.Arrowsmith, J.Weigelt, M.Sundstrom, A.Bochkarev, R.Hui, T.Hills, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.80 / 2.50
Space group P 41 3 2
Cell size a, b, c (Å), α, β, γ (°) 132.399, 132.399, 132.399, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 24.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Plasmodium Yoelii Cyclophilin-Like Protein (pdb code 2b71). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Plasmodium Yoelii Cyclophilin-Like Protein, PDB code: 2b71:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 2b71

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Chlorine binding site 1 out of 5 in the Plasmodium Yoelii Cyclophilin-Like Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Plasmodium Yoelii Cyclophilin-Like Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1000

b:28.6
occ:1.00
N A:TYR57 3.2 24.8 1.0
N A:TRP56 3.4 24.7 1.0
CB A:HIS35 3.7 26.3 1.0
CB A:TYR57 4.0 24.3 1.0
CB A:TRP56 4.0 23.1 1.0
C A:TYR55 4.0 24.7 1.0
CA A:TRP56 4.0 24.4 1.0
C A:TRP56 4.1 24.7 1.0
O A:LEU54 4.1 24.8 1.0
CA A:TYR57 4.1 24.9 1.0
CA A:TYR55 4.1 24.2 1.0
CG A:HIS35 4.3 29.9 1.0
CA A:HIS35 4.5 28.2 1.0
ND1 A:HIS35 4.6 34.0 1.0
N A:HIS35 4.6 27.9 1.0
O A:HOH1019 4.7 24.1 1.0
O A:TYR55 4.8 23.9 1.0
CG A:TRP56 4.9 23.5 1.0
CD1 A:TRP56 4.9 24.2 1.0
C A:LEU54 5.0 25.5 1.0

Chlorine binding site 2 out of 5 in 2b71

Go back to Chlorine Binding Sites List in 2b71
Chlorine binding site 2 out of 5 in the Plasmodium Yoelii Cyclophilin-Like Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Plasmodium Yoelii Cyclophilin-Like Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1001

b:39.6
occ:1.00
CD A:PRO145 3.4 29.0 1.0
N A:ALA122 3.4 27.2 1.0
CA A:GLY121 3.8 29.6 1.0
CA A:ALA144 3.9 27.0 1.0
CB A:ALA122 3.9 25.2 1.0
C A:GLY121 4.0 28.9 1.0
N A:PRO145 4.1 28.5 1.0
CA A:ALA122 4.2 27.4 1.0
C A:ALA144 4.3 27.7 1.0
CG A:PRO145 4.5 26.8 1.0
N A:ALA144 4.7 26.4 1.0
O A:LEU143 4.7 28.1 1.0
CB A:ALA144 4.8 25.2 1.0
C A:LEU143 5.0 25.9 1.0

Chlorine binding site 3 out of 5 in 2b71

Go back to Chlorine Binding Sites List in 2b71
Chlorine binding site 3 out of 5 in the Plasmodium Yoelii Cyclophilin-Like Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Plasmodium Yoelii Cyclophilin-Like Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1002

b:39.5
occ:1.00
N A:ASN86 2.9 24.8 1.0
O A:HOH1053 3.2 30.2 1.0
CA A:PRO85 3.4 25.1 1.0
C A:PRO85 3.6 24.8 1.0
CD1 A:LEU143 3.7 17.5 1.0
CB A:PRO85 3.8 23.7 1.0
CB A:LEU143 4.0 23.7 1.0
CA A:ASN86 4.0 27.6 1.0
CB A:ALA170 4.0 23.9 1.0
ND2 A:ASN86 4.1 36.2 1.0
CG A:LEU143 4.3 22.7 1.0
CG A:ASN86 4.5 34.0 1.0
O A:HOH1099 4.5 34.7 1.0
O A:HOH1074 4.6 38.2 1.0
CD2 A:LEU143 4.6 19.0 1.0
O A:LEU143 4.7 28.1 1.0
N A:PRO85 4.8 25.5 1.0
O A:PRO85 4.8 23.7 1.0
CB A:ASN86 4.9 28.4 1.0
CG A:PRO85 4.9 25.1 1.0

Chlorine binding site 4 out of 5 in 2b71

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Chlorine binding site 4 out of 5 in the Plasmodium Yoelii Cyclophilin-Like Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Plasmodium Yoelii Cyclophilin-Like Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1003

b:67.2
occ:1.00
NH2 A:ARG82 3.0 36.2 1.0
O A:HOH1023 4.0 27.9 1.0
CZ A:ARG82 4.3 34.7 1.0
NE A:ARG82 4.9 33.5 1.0

Chlorine binding site 5 out of 5 in 2b71

Go back to Chlorine Binding Sites List in 2b71
Chlorine binding site 5 out of 5 in the Plasmodium Yoelii Cyclophilin-Like Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Plasmodium Yoelii Cyclophilin-Like Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1004

b:54.1
occ:1.00
O A:HOH1097 3.2 38.3 1.0
NE2 A:GLN90 3.3 41.2 1.0
OG A:SER128 3.5 40.8 1.0
NH1 A:ARG82 3.5 29.6 1.0
O A:HOH1062 3.6 26.3 1.0
O A:HOH1079 3.7 41.8 1.0
OE1 A:GLN90 3.9 32.9 1.0
CD A:GLN90 4.0 34.9 1.0
O A:ASN129 4.4 37.1 1.0
CZ A:ARG82 4.6 34.7 1.0
CE1 A:PHE140 4.6 40.3 1.0
CB A:SER128 4.9 33.7 1.0
NH2 A:ARG82 4.9 36.2 1.0
CZ A:PHE140 5.0 39.4 1.0

Reference:

M.Vedadi, J.Lew, J.Artz, M.Amani, Y.Zhao, A.Dong, G.A.Wasney, M.Gao, T.Hills, S.Brokx, W.Qiu, S.Sharma, A.Diassiti, Z.Alam, M.Melone, A.Mulichak, A.Wernimont, J.Bray, P.Loppnau, O.Plotnikova, K.Newberry, E.Sundararajan, S.Houston, J.Walker, W.Tempel, A.Bochkarev, I.Kozieradzki, A.Edwards, C.Arrowsmith, D.Roos, K.Kain, R.Hui. Genome-Scale Protein Expression and Structural Biology of Plasmodium Falciparum and Related Apicomplexan Organisms. Mol.Biochem.Parasitol. V. 151 100 2007.
ISSN: ISSN 0166-6851
PubMed: 17125854
DOI: 10.1016/J.MOLBIOPARA.2006.10.011
Page generated: Thu Jul 10 21:20:52 2025

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