Chlorine in PDB 2bpu: The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction

Enzymatic activity of The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction

All present enzymatic activity of The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction:
3.2.1.17;

Protein crystallography data

The structure of The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction, PDB code: 2bpu was solved by J.Jakoncic, M.Di Michiel, Z.Zhong, V.Honkimaki, Y.Jouanneau, V.Stojanoff, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	27.83 / 1.35
*Space group*	P 4₃ 2₁ 2
*Cell size a, b, c (Å), α, β, γ (°)*	78.707, 78.707, 37.325, 90.00, 90.00, 90.00
*R / R_free (%)*	18.3 / 20.7

Other elements in 2bpu:

The structure of The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction also contains other interesting chemical elements:

Holmium	(Ho)	3 atoms
Sodium	(Na)	1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction (pdb code 2bpu). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction, PDB code: 2bpu:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 2bpu

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Chlorine Binding Sites List in 2bpu

Chlorine binding site 1 out of 3 in the The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl1130 b:13.2 occ:1.00	O	A:HOH2016	3.0	27.1	1.0
	OH	A:TYR23	3.0	9.3	1.0
	O	A:HOH2019	3.2	12.2	1.0
	CZ	A:TYR23	3.7	9.2	1.0
	CE2	A:TYR23	3.7	9.3	1.0
	CA	A:GLY104	4.3	9.4	1.0
	O	A:ARG21	4.6	13.0	1.0
	N	A:GLY104	4.8	9.4	1.0
	CE1	A:TYR23	4.9	9.2	1.0
	CD2	A:TYR23	4.9	9.0	1.0

Chlorine binding site 2 out of 3 in 2bpu

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Chlorine Binding Sites List in 2bpu

Chlorine binding site 2 out of 3 in the The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl1131 b:17.4 occ:1.00	OG	A:SER24	3.0	14.4	1.0
	N	A:GLY26	3.2	9.6	1.0
	CB	A:SER24	3.4	12.4	1.0
	CA	A:GLY26	3.5	9.9	1.0
	CA	A:GLN121	3.6	16.2	1.0
	CB	A:GLN121	3.9	17.4	1.0
	N	A:GLN121	3.9	14.4	1.0
	CD1	A:ILE124	4.0	16.9	1.0
	N	A:LEU25	4.2	10.6	1.0
	O	A:VAL120	4.3	12.3	1.0
	C	A:SER24	4.3	11.4	1.0
	C	A:VAL120	4.3	14.2	1.0
	C	A:LEU25	4.3	10.2	1.0
	CG1	A:ILE124	4.4	13.5	1.0
	CG2	A:VAL120	4.4	15.3	1.0
	CA	A:SER24	4.5	11.8	1.0
	C	A:GLY26	4.5	9.7	1.0
	N	A:ASN27	4.6	9.6	1.0
	CA	A:LEU25	4.7	10.9	1.0
	O	A:SER24	4.8	12.2	1.0
	C	A:GLN121	4.8	14.7	1.0
	O	A:HOH2021	4.9	25.6	1.0

Chlorine binding site 3 out of 3 in 2bpu

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Chlorine Binding Sites List in 2bpu

Chlorine binding site 3 out of 3 in the The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl1132 b:19.8 occ:1.00	N	A:THR69	3.1	17.9	1.0
	O	A:HOH2059	3.2	14.6	1.0
	O	A:THR69	3.4	17.4	1.0
	C	A:GLY67	3.5	17.0	1.0
	N	A:ARG68	3.5	17.4	1.0
	CA	A:GLY67	3.5	15.1	1.0
	C	A:THR69	3.6	18.7	1.0
	N	A:GLY67	3.6	13.8	1.0
	OD1	A:ASN65	3.7	15.3	1.0
	CA	A:THR69	3.8	17.8	1.0
	OG	A:SER72	3.8	20.2	1.0
	O	A:HOH2057	4.0	14.2	1.0
	O	A:GLY67	4.0	19.0	1.0
	C	A:ARG68	4.1	18.1	1.0
	CB	A:THR69	4.2	17.1	1.0
	OD1	A:ASP66	4.2	10.9	1.0
	CA	A:ARG68	4.2	18.2	1.0
	N	A:PRO70	4.3	20.7	1.0
	CA	A:PRO70	4.6	22.4	1.0
	NA	A:NA1133	4.7	14.4	1.0
	C	A:ASP66	4.8	12.7	1.0
	OG1	A:THR69	4.8	13.6	1.0
	N	A:ASP66	4.9	11.3	1.0
	CG	A:ASN65	4.9	14.5	1.0

Reference:

J.Jakoncic, M.Di Michiel, Z.Zhong, V.Honkimaki, Y.Jouanneau, V.Stojanoff. Anomalous Diffraction at Ultra-High Energy For Protein Crystallography. J.Appl.Crystallogr. V. 39 831 2006.
ISSN: ISSN 0021-8898
DOI: 10.1107/S0021889806036387

Page generated: Sat Jul 20 05:51:11 2024

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