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Chlorine in PDB 2bpu: The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction

Enzymatic activity of The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction

All present enzymatic activity of The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction:
3.2.1.17;

Protein crystallography data

The structure of The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction, PDB code: 2bpu was solved by J.Jakoncic, M.Di Michiel, Z.Zhong, V.Honkimaki, Y.Jouanneau, V.Stojanoff, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.83 / 1.35
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.707, 78.707, 37.325, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 20.7

Other elements in 2bpu:

The structure of The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction also contains other interesting chemical elements:

Holmium (Ho) 3 atoms
Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction (pdb code 2bpu). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction, PDB code: 2bpu:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 2bpu

Go back to Chlorine Binding Sites List in 2bpu
Chlorine binding site 1 out of 3 in the The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1130

b:13.2
occ:1.00
O A:HOH2016 3.0 27.1 1.0
OH A:TYR23 3.0 9.3 1.0
O A:HOH2019 3.2 12.2 1.0
CZ A:TYR23 3.7 9.2 1.0
CE2 A:TYR23 3.7 9.3 1.0
CA A:GLY104 4.3 9.4 1.0
O A:ARG21 4.6 13.0 1.0
N A:GLY104 4.8 9.4 1.0
CE1 A:TYR23 4.9 9.2 1.0
CD2 A:TYR23 4.9 9.0 1.0

Chlorine binding site 2 out of 3 in 2bpu

Go back to Chlorine Binding Sites List in 2bpu
Chlorine binding site 2 out of 3 in the The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1131

b:17.4
occ:1.00
OG A:SER24 3.0 14.4 1.0
N A:GLY26 3.2 9.6 1.0
CB A:SER24 3.4 12.4 1.0
CA A:GLY26 3.5 9.9 1.0
CA A:GLN121 3.6 16.2 1.0
CB A:GLN121 3.9 17.4 1.0
N A:GLN121 3.9 14.4 1.0
CD1 A:ILE124 4.0 16.9 1.0
N A:LEU25 4.2 10.6 1.0
O A:VAL120 4.3 12.3 1.0
C A:SER24 4.3 11.4 1.0
C A:VAL120 4.3 14.2 1.0
C A:LEU25 4.3 10.2 1.0
CG1 A:ILE124 4.4 13.5 1.0
CG2 A:VAL120 4.4 15.3 1.0
CA A:SER24 4.5 11.8 1.0
C A:GLY26 4.5 9.7 1.0
N A:ASN27 4.6 9.6 1.0
CA A:LEU25 4.7 10.9 1.0
O A:SER24 4.8 12.2 1.0
C A:GLN121 4.8 14.7 1.0
O A:HOH2021 4.9 25.6 1.0

Chlorine binding site 3 out of 3 in 2bpu

Go back to Chlorine Binding Sites List in 2bpu
Chlorine binding site 3 out of 3 in the The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1132

b:19.8
occ:1.00
N A:THR69 3.1 17.9 1.0
O A:HOH2059 3.2 14.6 1.0
O A:THR69 3.4 17.4 1.0
C A:GLY67 3.5 17.0 1.0
N A:ARG68 3.5 17.4 1.0
CA A:GLY67 3.5 15.1 1.0
C A:THR69 3.6 18.7 1.0
N A:GLY67 3.6 13.8 1.0
OD1 A:ASN65 3.7 15.3 1.0
CA A:THR69 3.8 17.8 1.0
OG A:SER72 3.8 20.2 1.0
O A:HOH2057 4.0 14.2 1.0
O A:GLY67 4.0 19.0 1.0
C A:ARG68 4.1 18.1 1.0
CB A:THR69 4.2 17.1 1.0
OD1 A:ASP66 4.2 10.9 1.0
CA A:ARG68 4.2 18.2 1.0
N A:PRO70 4.3 20.7 1.0
CA A:PRO70 4.6 22.4 1.0
NA A:NA1133 4.7 14.4 1.0
C A:ASP66 4.8 12.7 1.0
OG1 A:THR69 4.8 13.6 1.0
N A:ASP66 4.9 11.3 1.0
CG A:ASN65 4.9 14.5 1.0

Reference:

J.Jakoncic, M.Di Michiel, Z.Zhong, V.Honkimaki, Y.Jouanneau, V.Stojanoff. Anomalous Diffraction at Ultra-High Energy For Protein Crystallography. J.Appl.Crystallogr. V. 39 831 2006.
ISSN: ISSN 0021-8898
DOI: 10.1107/S0021889806036387
Page generated: Sat Dec 12 09:00:40 2020

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