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Chlorine in PDB 2c10: The Structure of A Truncated, Soluble Version of Semicarbazide- Sensitive Amine Oxidase

Enzymatic activity of The Structure of A Truncated, Soluble Version of Semicarbazide- Sensitive Amine Oxidase

All present enzymatic activity of The Structure of A Truncated, Soluble Version of Semicarbazide- Sensitive Amine Oxidase:
1.4.3.6;

Protein crystallography data

The structure of The Structure of A Truncated, Soluble Version of Semicarbazide- Sensitive Amine Oxidase, PDB code: 2c10 was solved by E.Jakobsson, G.J.Kleywegt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.50
Space group P 43
Cell size a, b, c (Å), α, β, γ (°) 130.236, 130.236, 221.529, 90.00, 90.00, 90.00
R / Rfree (%) 20.4 / 25.2

Other elements in 2c10:

The structure of The Structure of A Truncated, Soluble Version of Semicarbazide- Sensitive Amine Oxidase also contains other interesting chemical elements:

Copper (Cu) 4 atoms
Calcium (Ca) 8 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Structure of A Truncated, Soluble Version of Semicarbazide- Sensitive Amine Oxidase (pdb code 2c10). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the The Structure of A Truncated, Soluble Version of Semicarbazide- Sensitive Amine Oxidase, PDB code: 2c10:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in 2c10

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Chlorine binding site 1 out of 8 in the The Structure of A Truncated, Soluble Version of Semicarbazide- Sensitive Amine Oxidase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Structure of A Truncated, Soluble Version of Semicarbazide- Sensitive Amine Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1774

b:19.4
occ:1.00
NE A:ARG383 3.2 30.4 1.0
NH2 A:ARG383 3.3 29.4 1.0
N B:GLN560 3.4 34.0 1.0
OG A:SER619 3.7 41.5 1.0
CZ A:ARG383 3.7 30.8 1.0
CA B:LEU559 4.1 35.1 1.0
CB B:GLN560 4.1 32.7 1.0
CG B:GLN560 4.1 32.6 1.0
CB B:LEU559 4.2 35.0 1.0
O B:GLN560 4.2 32.9 1.0
CE A:MET621 4.2 31.7 1.0
C B:LEU559 4.2 34.9 1.0
CA B:GLN560 4.2 33.0 1.0
CD2 A:LEU615 4.2 43.4 1.0
CD1 A:LEU615 4.2 42.3 1.0
CD A:ARG383 4.4 29.8 1.0
SD A:MET621 4.5 32.5 1.0
CB A:SER619 4.5 40.6 1.0
C B:GLN560 4.6 32.8 1.0
CG A:LEU615 4.6 43.2 1.0
CG A:MET621 4.7 31.8 1.0

Chlorine binding site 2 out of 8 in 2c10

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Chlorine binding site 2 out of 8 in the The Structure of A Truncated, Soluble Version of Semicarbazide- Sensitive Amine Oxidase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Structure of A Truncated, Soluble Version of Semicarbazide- Sensitive Amine Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1775

b:24.4
occ:0.60
CB A:TYR166 3.8 32.8 1.0
N A:HIS167 3.8 33.5 1.0
NZ A:LYS252 3.9 31.7 1.0
CB A:HIS167 4.2 34.0 1.0
CD2 A:TYR166 4.2 31.8 1.0
C A:TYR166 4.2 33.8 1.0
CA A:HIS167 4.2 33.9 1.0
CA A:TYR166 4.5 33.6 1.0
CG A:TYR166 4.5 31.6 1.0
O A:LYS252 4.7 33.5 1.0
O A:TYR166 4.8 33.8 1.0
CD2 A:LEU254 4.8 33.1 1.0
CG A:LYS252 4.8 33.6 1.0
CE A:LYS252 4.9 35.3 1.0
NH1 A:ARG169 4.9 31.4 1.0
N A:TYR166 5.0 34.0 1.0

Chlorine binding site 3 out of 8 in 2c10

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Chlorine binding site 3 out of 8 in the The Structure of A Truncated, Soluble Version of Semicarbazide- Sensitive Amine Oxidase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of The Structure of A Truncated, Soluble Version of Semicarbazide- Sensitive Amine Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1778

b:18.9
occ:1.00
N A:GLN560 3.2 35.1 1.0
NE B:ARG383 3.4 32.7 1.0
NH2 B:ARG383 3.5 30.6 1.0
CZ B:ARG383 3.9 32.8 1.0
OG B:SER619 3.9 43.4 1.0
CA A:LEU559 3.9 36.7 1.0
CB A:GLN560 4.0 34.5 1.0
CG A:GLN560 4.0 35.4 1.0
C A:LEU559 4.0 36.0 1.0
CA A:GLN560 4.1 34.5 1.0
CB A:LEU559 4.1 36.6 1.0
CE B:MET621 4.1 38.9 1.0
CD1 B:LEU615 4.3 44.7 1.0
O A:GLN560 4.3 33.4 1.0
CD B:ARG383 4.5 30.7 1.0
CD2 B:LEU615 4.5 46.6 1.0
CB B:SER619 4.6 43.2 1.0
C A:GLN560 4.6 33.7 1.0
SD B:MET621 4.7 39.1 1.0
CG B:MET621 4.8 37.6 1.0
CG B:LEU615 4.8 46.4 1.0

Chlorine binding site 4 out of 8 in 2c10

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Chlorine binding site 4 out of 8 in the The Structure of A Truncated, Soluble Version of Semicarbazide- Sensitive Amine Oxidase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of The Structure of A Truncated, Soluble Version of Semicarbazide- Sensitive Amine Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1779

b:18.3
occ:0.60
N B:HIS167 3.9 34.8 1.0
CB B:TYR166 4.0 33.6 1.0
NZ B:LYS252 4.0 37.4 1.0
CB B:HIS167 4.0 35.4 1.0
CA B:HIS167 4.2 35.3 1.0
CD2 B:TYR166 4.2 32.3 1.0
C B:TYR166 4.3 34.5 1.0
CE B:LYS252 4.6 38.2 1.0
CG B:TYR166 4.6 33.0 1.0
O B:LYS252 4.6 34.7 1.0
CA B:TYR166 4.7 34.1 1.0
CG B:LYS252 4.7 34.0 1.0
NH2 B:ARG169 4.7 26.2 1.0
CD2 B:LEU254 4.7 36.7 1.0
ND1 B:HIS167 4.8 36.1 1.0
O B:HOH2016 4.8 32.8 1.0
CG B:HIS167 4.9 36.2 1.0
O B:TYR166 4.9 34.7 1.0

Chlorine binding site 5 out of 8 in 2c10

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Chlorine binding site 5 out of 8 in the The Structure of A Truncated, Soluble Version of Semicarbazide- Sensitive Amine Oxidase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of The Structure of A Truncated, Soluble Version of Semicarbazide- Sensitive Amine Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl1774

b:15.1
occ:1.00
NH2 C:ARG383 3.2 27.9 1.0
N D:GLN560 3.3 32.7 1.0
NE C:ARG383 3.3 27.5 1.0
CZ C:ARG383 3.7 30.5 1.0
OG C:SER619 3.8 38.1 1.0
CG D:GLN560 3.9 33.4 1.0
CB D:GLN560 4.0 31.8 1.0
CA D:LEU559 4.0 33.9 1.0
C D:LEU559 4.1 33.7 1.0
CA D:GLN560 4.2 31.6 1.0
CB D:LEU559 4.2 33.8 1.0
CD1 C:LEU615 4.2 36.5 1.0
CE C:MET621 4.2 33.1 1.0
CD2 C:LEU615 4.4 37.4 1.0
O D:GLN560 4.4 30.9 1.0
CD C:ARG383 4.5 30.1 1.0
CB C:SER619 4.5 38.9 1.0
SD C:MET621 4.6 34.2 1.0
CG C:LEU615 4.7 39.0 1.0
C D:GLN560 4.7 30.9 1.0
CG C:MET621 4.8 33.5 1.0

Chlorine binding site 6 out of 8 in 2c10

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Chlorine binding site 6 out of 8 in the The Structure of A Truncated, Soluble Version of Semicarbazide- Sensitive Amine Oxidase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of The Structure of A Truncated, Soluble Version of Semicarbazide- Sensitive Amine Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl1775

b:24.6
occ:0.60
O C:HOH2017 3.3 22.4 1.0
NZ C:LYS252 3.6 33.0 1.0
N C:HIS167 3.7 33.3 1.0
CB C:TYR166 3.7 32.6 1.0
CD2 C:TYR166 4.0 30.9 1.0
CA C:HIS167 4.2 33.4 1.0
C C:TYR166 4.2 33.3 1.0
CB C:HIS167 4.2 33.6 1.0
CG C:TYR166 4.4 31.6 1.0
CA C:TYR166 4.5 33.1 1.0
O C:LYS252 4.6 29.5 1.0
CD2 C:LEU254 4.7 32.6 1.0
NH1 C:ARG169 4.7 29.2 1.0
CG C:LYS252 4.8 30.1 1.0
ND1 C:HIS167 4.9 37.3 1.0
CE C:LYS252 4.9 32.9 1.0
O C:TYR166 4.9 33.4 1.0
N C:TYR166 5.0 33.7 1.0

Chlorine binding site 7 out of 8 in 2c10

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Chlorine binding site 7 out of 8 in the The Structure of A Truncated, Soluble Version of Semicarbazide- Sensitive Amine Oxidase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of The Structure of A Truncated, Soluble Version of Semicarbazide- Sensitive Amine Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl1779

b:16.9
occ:1.00
NH2 D:ARG383 3.2 31.3 1.0
NE D:ARG383 3.2 31.6 1.0
N C:GLN560 3.3 34.3 1.0
CZ D:ARG383 3.6 31.9 1.0
CA C:LEU559 4.0 35.2 1.0
CB C:GLN560 4.1 33.9 1.0
OG D:SER619 4.1 42.0 1.0
C C:LEU559 4.1 34.8 1.0
CG C:GLN560 4.2 34.7 1.0
CB C:LEU559 4.2 35.2 1.0
CA C:GLN560 4.2 34.1 1.0
CE D:MET621 4.2 32.2 1.0
CD2 D:LEU615 4.3 43.8 1.0
CD1 D:LEU615 4.3 43.3 1.0
O C:GLN560 4.3 33.6 1.0
CD D:ARG383 4.4 30.7 1.0
SD D:MET621 4.5 34.6 1.0
CB D:SER619 4.6 40.6 1.0
C C:GLN560 4.7 33.6 1.0
CG D:LEU615 4.7 43.3 1.0
CG D:MET621 4.8 34.1 1.0
NH1 D:ARG383 5.0 31.9 1.0

Chlorine binding site 8 out of 8 in 2c10

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Chlorine binding site 8 out of 8 in the The Structure of A Truncated, Soluble Version of Semicarbazide- Sensitive Amine Oxidase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of The Structure of A Truncated, Soluble Version of Semicarbazide- Sensitive Amine Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl1780

b:21.4
occ:0.60
N D:HIS167 3.8 33.8 1.0
NZ D:LYS252 3.9 35.0 1.0
CB D:TYR166 3.9 33.5 1.0
CB D:HIS167 4.0 34.1 1.0
CA D:HIS167 4.2 34.0 1.0
C D:TYR166 4.3 33.8 1.0
CD2 D:TYR166 4.4 33.1 1.0
NH2 D:ARG169 4.5 38.7 1.0
CA D:TYR166 4.6 34.0 1.0
ND1 D:HIS167 4.6 35.1 1.0
CG D:LYS252 4.6 33.7 1.0
CE D:LYS252 4.7 36.9 1.0
CG D:TYR166 4.7 32.8 1.0
CD2 D:LEU254 4.7 35.3 1.0
O D:LYS252 4.7 33.2 1.0
CG D:HIS167 4.8 34.7 1.0
O D:HOH2016 4.8 27.2 1.0
N D:TYR166 4.9 34.0 1.0

Reference:

E.Jakobsson, J.Nilsson, D.Ogg, G.J.Kleywegt. Structure of Human Semicarbazide-Sensitive Amine Oxidase/Vascular Adhesion Protein-1. Acta Crystallogr. D Biol. V. 61 1550 2005CRYSTALLOGR..
ISSN: ISSN 0907-4449
PubMed: 16239734
DOI: 10.1107/S0907444905028805
Page generated: Sat Jul 20 06:02:31 2024

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