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Chlorine in PDB 2c11: Crystal Structure of the 2-Hydrazinopyridine of Semicarbazide- Sensitive Amine Oxidase

Enzymatic activity of Crystal Structure of the 2-Hydrazinopyridine of Semicarbazide- Sensitive Amine Oxidase

All present enzymatic activity of Crystal Structure of the 2-Hydrazinopyridine of Semicarbazide- Sensitive Amine Oxidase:
1.4.3.6;

Protein crystallography data

The structure of Crystal Structure of the 2-Hydrazinopyridine of Semicarbazide- Sensitive Amine Oxidase, PDB code: 2c11 was solved by E.Jakobsson, G.J.Kleywegt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.90
Space group P 43
Cell size a, b, c (Å), α, β, γ (°) 127.402, 127.402, 219.361, 90.00, 90.00, 90.00
R / Rfree (%) 21.5 / 27.6

Other elements in 2c11:

The structure of Crystal Structure of the 2-Hydrazinopyridine of Semicarbazide- Sensitive Amine Oxidase also contains other interesting chemical elements:

Copper (Cu) 30 atoms
Calcium (Ca) 8 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the 2-Hydrazinopyridine of Semicarbazide- Sensitive Amine Oxidase (pdb code 2c11). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of the 2-Hydrazinopyridine of Semicarbazide- Sensitive Amine Oxidase, PDB code: 2c11:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 2c11

Go back to Chlorine Binding Sites List in 2c11
Chlorine binding site 1 out of 4 in the Crystal Structure of the 2-Hydrazinopyridine of Semicarbazide- Sensitive Amine Oxidase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the 2-Hydrazinopyridine of Semicarbazide- Sensitive Amine Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1739

b:47.5
occ:1.00
N B:GLN560 3.5 67.1 1.0
NE A:ARG383 3.5 53.3 1.0
OG A:SER619 3.6 72.6 1.0
NH2 A:ARG383 3.9 53.7 1.0
CA B:LEU559 4.0 65.7 1.0
CE A:MET621 4.0 71.8 1.0
CZ A:ARG383 4.2 53.9 1.0
CB B:GLN560 4.2 64.6 1.0
C B:LEU559 4.3 66.9 1.0
CB B:LEU559 4.3 64.5 1.0
CA B:GLN560 4.4 64.1 1.0
SD A:MET621 4.4 72.2 1.0
CG B:GLN560 4.5 67.2 1.0
O B:GLN560 4.5 63.4 1.0
CD A:ARG383 4.5 53.8 1.0
CD1 A:LEU615 4.5 70.8 1.0
CG A:MET621 4.6 72.3 1.0
CB A:SER619 4.7 72.5 1.0
C B:GLN560 4.8 63.0 1.0
CD2 A:LEU615 4.8 71.4 1.0
O B:GLN558 4.9 69.3 1.0

Chlorine binding site 2 out of 4 in 2c11

Go back to Chlorine Binding Sites List in 2c11
Chlorine binding site 2 out of 4 in the Crystal Structure of the 2-Hydrazinopyridine of Semicarbazide- Sensitive Amine Oxidase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the 2-Hydrazinopyridine of Semicarbazide- Sensitive Amine Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1746

b:47.0
occ:1.00
OG B:SER619 3.4 69.5 1.0
N A:GLN560 3.5 66.3 1.0
CB A:GLN560 3.6 64.1 1.0
CG A:GLN560 3.7 65.2 1.0
NE B:ARG383 3.8 49.3 1.0
CD1 B:LEU615 4.0 69.7 1.0
CD1 A:LEU559 4.0 66.2 1.0
NH2 B:ARG383 4.1 47.5 1.0
CA A:GLN560 4.1 63.9 1.0
CD2 B:LEU615 4.1 70.1 1.0
O A:GLN560 4.3 62.7 1.0
CE B:MET621 4.4 65.7 1.0
CB B:SER619 4.4 68.9 1.0
CZ B:ARG383 4.4 48.4 1.0
C A:LEU559 4.5 67.1 1.0
SD B:MET621 4.5 64.2 1.0
CG B:MET621 4.5 67.0 1.0
CA A:LEU559 4.5 66.3 1.0
C A:GLN560 4.6 63.2 1.0
CG B:LEU615 4.7 69.9 1.0
CD B:ARG383 4.8 49.8 1.0
CG A:LEU559 4.9 66.4 1.0

Chlorine binding site 3 out of 4 in 2c11

Go back to Chlorine Binding Sites List in 2c11
Chlorine binding site 3 out of 4 in the Crystal Structure of the 2-Hydrazinopyridine of Semicarbazide- Sensitive Amine Oxidase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the 2-Hydrazinopyridine of Semicarbazide- Sensitive Amine Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl1740

b:49.0
occ:1.00
N D:GLN560 3.1 66.6 1.0
NE C:ARG383 3.1 54.7 1.0
NH2 C:ARG383 3.3 54.1 1.0
CZ C:ARG383 3.6 54.5 1.0
CB D:GLN560 3.7 64.2 1.0
O D:GLN560 3.7 64.0 1.0
CA D:GLN560 3.8 63.8 1.0
OG C:SER619 4.0 71.4 1.0
CA D:LEU559 4.0 65.8 1.0
C D:LEU559 4.0 66.7 1.0
C D:GLN560 4.1 63.8 1.0
CD1 C:LEU615 4.1 70.1 1.0
CG D:GLN560 4.2 66.8 1.0
CD C:ARG383 4.2 54.5 1.0
CB D:LEU559 4.3 64.9 1.0
CE C:MET621 4.3 72.5 1.0
SD C:MET621 4.5 72.4 1.0
CD2 C:LEU615 4.7 71.0 1.0
CG C:LEU615 4.9 71.0 1.0
CG C:MET621 4.9 73.3 1.0
NH1 C:ARG383 5.0 54.3 1.0
CB C:SER619 5.0 72.2 1.0

Chlorine binding site 4 out of 4 in 2c11

Go back to Chlorine Binding Sites List in 2c11
Chlorine binding site 4 out of 4 in the Crystal Structure of the 2-Hydrazinopyridine of Semicarbazide- Sensitive Amine Oxidase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of the 2-Hydrazinopyridine of Semicarbazide- Sensitive Amine Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl1744

b:45.7
occ:1.00
NE D:ARG383 3.2 48.7 1.0
CD1 C:LEU559 3.5 66.0 1.0
N C:GLN560 3.7 66.1 1.0
NH2 D:ARG383 3.7 48.0 1.0
CZ D:ARG383 3.9 48.5 1.0
CB C:GLN560 4.1 64.9 1.0
CE D:MET621 4.1 66.1 1.0
OG D:SER619 4.2 68.3 1.0
O C:GLN560 4.2 62.8 1.0
SD D:MET621 4.2 64.1 1.0
CD D:ARG383 4.3 49.9 1.0
CD1 D:LEU615 4.3 69.6 1.0
CA C:GLN560 4.4 64.7 1.0
CG C:GLN560 4.4 66.0 1.0
CD2 D:LEU615 4.5 70.1 1.0
CA C:LEU559 4.6 65.7 1.0
CG C:LEU559 4.6 66.1 1.0
C C:LEU559 4.6 65.9 1.0
CG D:MET621 4.6 66.8 1.0
C C:GLN560 4.7 63.2 1.0

Reference:

E.Jakobsson, J.Nilsson, D.Ogg, G.J.Kleywegt. Structure of Human Semicarbazide-Sensitive Amine Oxidase/Vascular Adhesion Protein-1. Acta Crystallogr. D Biol. V. 61 1550 2005CRYSTALLOGR..
ISSN: ISSN 0907-4449
PubMed: 16239734
DOI: 10.1107/S0907444905028805
Page generated: Sat Jul 20 06:02:48 2024

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