Atomistry » Chlorine » PDB 2bwv-2c5h » 2c3a
Atomistry »
  Chlorine »
    PDB 2bwv-2c5h »
      2c3a »

Chlorine in PDB 2c3a: Structure of Unliganded Hsv Gd Reveals A Mechanism For Receptor-Mediated Activation of Virus Entry

Protein crystallography data

The structure of Structure of Unliganded Hsv Gd Reveals A Mechanism For Receptor-Mediated Activation of Virus Entry, PDB code: 2c3a was solved by C.Krummenacher, V.M.Supekar, J.C.Whitbeck, E.Lazear, S.A.Connolly, R.J.Eisenberg, G.H.Cohen, D.C.Wiley, A.Carfi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 2.5
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 67.629, 79.105, 123.563, 90.00, 90.00, 90.00
R / Rfree (%) 22.6 / 27.5

Other elements in 2c3a:

The structure of Structure of Unliganded Hsv Gd Reveals A Mechanism For Receptor-Mediated Activation of Virus Entry also contains other interesting chemical elements:

Zinc (Zn) 5 atoms
Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Unliganded Hsv Gd Reveals A Mechanism For Receptor-Mediated Activation of Virus Entry (pdb code 2c3a). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Unliganded Hsv Gd Reveals A Mechanism For Receptor-Mediated Activation of Virus Entry, PDB code: 2c3a:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 2c3a

Go back to Chlorine Binding Sites List in 2c3a
Chlorine binding site 1 out of 2 in the Structure of Unliganded Hsv Gd Reveals A Mechanism For Receptor-Mediated Activation of Virus Entry


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Unliganded Hsv Gd Reveals A Mechanism For Receptor-Mediated Activation of Virus Entry within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1309

b:42.0
occ:1.00
ND2 A:ASN227 3.2 46.9 1.0
OE1 A:GLN27 3.3 58.9 1.0
CG A:PRO297 3.4 46.9 1.0
N A:ILE224 3.5 40.5 1.0
CD A:PRO297 3.6 47.6 1.0
CA A:PHE223 3.7 39.0 1.0
CB A:PHE223 3.7 39.2 1.0
CD2 A:PHE223 3.8 40.3 1.0
CG1 A:ILE224 3.9 42.0 1.0
OE1 A:GLN132 4.0 36.9 1.0
CG2 A:ILE224 4.0 42.4 1.0
C A:PHE223 4.1 39.3 1.0
CG A:PHE223 4.2 39.7 1.0
CG A:ASN227 4.2 43.5 1.0
CD A:GLN27 4.2 58.8 1.0
CB A:ASN227 4.3 42.6 1.0
CB A:ILE224 4.4 41.4 1.0
NE2 A:GLN27 4.4 58.0 1.0
O A:LEU28 4.5 55.0 1.0
CA A:ILE224 4.5 41.3 1.0
CD1 A:ILE224 4.8 41.2 1.0
CB A:PRO297 4.9 46.7 1.0
O A:ARG222 4.9 38.8 1.0
N A:PRO297 4.9 47.5 1.0
N A:PHE223 4.9 38.9 1.0
CE2 A:PHE223 5.0 38.2 1.0

Chlorine binding site 2 out of 2 in 2c3a

Go back to Chlorine Binding Sites List in 2c3a
Chlorine binding site 2 out of 2 in the Structure of Unliganded Hsv Gd Reveals A Mechanism For Receptor-Mediated Activation of Virus Entry


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Unliganded Hsv Gd Reveals A Mechanism For Receptor-Mediated Activation of Virus Entry within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1310

b:29.9
occ:1.00
NE2 B:GLN27 3.2 34.6 1.0
N B:ILE224 3.5 25.7 1.0
ND2 B:ASN227 3.5 31.3 1.0
O B:HOH2001 3.5 26.4 1.0
CD2 B:PHE223 3.7 27.8 1.0
CD B:PRO297 3.7 39.8 1.0
CG B:PRO297 3.8 40.9 1.0
CA B:PHE223 3.8 25.0 1.0
CG2 B:ILE224 3.9 27.1 1.0
CB B:PHE223 3.9 25.0 1.0
CG1 B:ILE224 4.0 29.1 1.0
C B:PHE223 4.2 25.1 1.0
CD B:GLN27 4.2 36.1 1.0
NE2 B:GLN132 4.3 25.8 1.0
CG B:PHE223 4.3 25.8 1.0
CB B:ILE224 4.3 27.5 1.0
CB B:ASN227 4.4 28.8 1.0
CG B:GLN27 4.4 38.6 1.0
CG B:ASN227 4.4 30.4 1.0
O B:LEU28 4.5 40.0 1.0
CD1 B:ILE224 4.5 31.3 1.0
CA B:ILE224 4.5 26.8 1.0
CE2 B:PHE223 4.8 27.1 1.0
CB B:PRO297 4.8 40.1 1.0
O B:HIS295 4.9 39.1 1.0

Reference:

C.Krummenacher, V.M.Supekar, J.C.Whitbeck, E.Lazear, S.A.Connolly, R.J.Eisenberg, G.H.Cohen, D.C.Wiley, A.Carfi. Structure of Unliganded Hsv Gd Reveals A Mechanism For Receptor-Mediated Activation of Virus Entry. Embo J. V. 24 4144 2005.
ISSN: ISSN 0261-4189
PubMed: 16292345
DOI: 10.1038/SJ.EMBOJ.7600875
Page generated: Sat Dec 12 09:01:34 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy