Atomistry » Chlorine » PDB 2bwv-2c5h » 2c3m
Atomistry »
  Chlorine »
    PDB 2bwv-2c5h »
      2c3m »

Chlorine in PDB 2c3m: Crystal Structure of Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio Africanus

Enzymatic activity of Crystal Structure of Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio Africanus

All present enzymatic activity of Crystal Structure of Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio Africanus:
1.2.7.1;

Protein crystallography data

The structure of Crystal Structure of Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio Africanus, PDB code: 2c3m was solved by C.Cavazza, C.Contreras-Martel, L.Pieulle, E.Chabriere, E.C.Hatchikian, J.C.Fontecilla-Camps, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 51.12 / 1.84
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 86.021, 146.158, 211.737, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 22.2

Other elements in 2c3m:

The structure of Crystal Structure of Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio Africanus also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Iron (Fe) 24 atoms
Calcium (Ca) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio Africanus (pdb code 2c3m). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio Africanus, PDB code: 2c3m:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 2c3m

Go back to Chlorine Binding Sites List in 2c3m
Chlorine binding site 1 out of 2 in the Crystal Structure of Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio Africanus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio Africanus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl2237

b:21.5
occ:1.00
O A:HOH2610 2.9 16.4 1.0
OG1 A:THR31 3.0 11.9 1.0
N A:THR31 3.3 10.2 1.0
CB A:THR31 3.4 11.6 1.0
CG2 A:THR997 3.6 14.2 1.0
C7' A:TPP2236 3.6 13.3 1.0
NH1 A:ARG114 3.7 16.0 1.0
CA A:THR31 3.9 12.0 1.0
N3 A:TPP2236 4.0 11.3 1.0
C2 A:TPP2236 4.0 12.4 1.0
CG1 A:ILE30 4.3 11.2 1.0
C A:ILE30 4.3 14.8 1.0
OD1 A:ASN996 4.4 31.8 1.0
CA A:ILE30 4.4 12.6 1.0
CG2 A:ILE123 4.4 12.5 1.0
O A:THR31 4.5 13.2 1.0
SD B:MET1202 4.5 31.8 1.0
N4' A:TPP2236 4.7 11.2 1.0
CZ A:ARG114 4.7 15.3 1.0
CG B:MET1202 4.7 21.5 1.0
CG2 A:THR31 4.7 12.8 1.0
C A:THR31 4.7 11.0 1.0
C5' A:TPP2236 4.8 10.4 1.0
NH2 A:ARG114 4.8 15.4 1.0
O A:HOH2010 4.9 19.7 1.0
C4 A:TPP2236 4.9 11.4 1.0
CB A:THR997 5.0 10.4 1.0

Chlorine binding site 2 out of 2 in 2c3m

Go back to Chlorine Binding Sites List in 2c3m
Chlorine binding site 2 out of 2 in the Crystal Structure of Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio Africanus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio Africanus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl2237

b:20.9
occ:1.00
O B:HOH2706 2.9 18.6 1.0
OG1 B:THR31 3.0 10.8 1.0
N B:THR31 3.2 8.3 1.0
CB B:THR31 3.4 11.7 1.0
C7' B:TPP2236 3.5 9.9 1.0
CG2 B:THR997 3.6 14.5 1.0
NH1 B:ARG114 3.7 10.1 1.0
N3 B:TPP2236 3.9 10.5 1.0
CA B:THR31 3.9 11.0 1.0
C2 B:TPP2236 4.0 14.1 1.0
CG1 B:ILE30 4.1 9.0 1.0
C B:ILE30 4.2 12.0 1.0
CA B:ILE30 4.2 8.3 1.0
O B:THR31 4.5 8.4 1.0
OD1 B:ASN996 4.5 25.5 1.0
CG2 B:ILE123 4.6 11.8 1.0
C5' B:TPP2236 4.7 7.5 1.0
CZ B:ARG114 4.7 10.3 1.0
C B:THR31 4.7 9.0 1.0
N4' B:TPP2236 4.7 13.9 1.0
CG2 B:THR31 4.8 11.3 1.0
SD A:MET1202 4.8 29.7 1.0
CB B:ILE30 4.9 9.6 1.0
C4 B:TPP2236 4.9 9.8 1.0
NH2 B:ARG114 4.9 11.2 1.0
O B:HOH2015 4.9 12.4 1.0
CG A:MET1202 4.9 21.3 1.0
CB B:THR997 4.9 10.3 1.0

Reference:

C.Cavazza, C.Contreras-Martel, L.Pieulle, E.Chabriere, E.C.Hatchikian, J.C.Fontecilla-Camps. Flexibility of Thiamine Diphosphate Revealed By Kinetic Crystallographic Studies of the Reaction of Pyruvate-Ferredoxin Oxidoreductase with Pyruvate. Structure V. 14 217 2006.
ISSN: ISSN 0969-2126
PubMed: 16472741
DOI: 10.1016/J.STR.2005.10.013
Page generated: Sat Dec 12 09:01:38 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy