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Chlorine in PDB 2cc8: Complexes of Dodecin with Flavin and Flavin-Like Ligands

Protein crystallography data

The structure of Complexes of Dodecin with Flavin and Flavin-Like Ligands, PDB code: 2cc8 was solved by M.Grininger, K.Zeth, D.Oesterhelt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.90
Space group F 41 3 2
Cell size a, b, c (Å), α, β, γ (°) 142.350, 142.350, 142.350, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / 22.5

Other elements in 2cc8:

The structure of Complexes of Dodecin with Flavin and Flavin-Like Ligands also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Complexes of Dodecin with Flavin and Flavin-Like Ligands (pdb code 2cc8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Complexes of Dodecin with Flavin and Flavin-Like Ligands, PDB code: 2cc8:

Chlorine binding site 1 out of 1 in 2cc8

Go back to Chlorine Binding Sites List in 2cc8
Chlorine binding site 1 out of 1 in the Complexes of Dodecin with Flavin and Flavin-Like Ligands


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Complexes of Dodecin with Flavin and Flavin-Like Ligands within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl104

b:19.9
occ:0.33
NA A:NA103 2.4 21.8 0.3
NE2 A:GLN59 3.3 15.0 1.0
O A:HOH2073 3.4 53.6 1.0
O A:HOH2074 3.6 16.2 1.0
CD2 A:LEU7 4.2 16.3 1.0
CD A:GLN59 4.3 14.5 1.0
OE1 A:GLN59 4.5 14.8 1.0
CB A:LEU7 4.7 16.3 1.0
O A:HOH2072 4.9 36.5 1.0

Reference:

M.Grininger, K.Zeth, D.Oesterhelt. Dodecins: A Family of Lumichrome Binding Proteins. J.Mol.Biol. V. 357 842 2006.
ISSN: ISSN 0022-2836
PubMed: 16460756
DOI: 10.1016/J.JMB.2005.12.072
Page generated: Sat Jul 20 06:15:43 2024

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