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Chlorine in PDB 2cv2: Glutamyl-Trna Synthetase From Thermus Thermophilus in Complex with Trna(Glu) and An Enzyme Inhibitor, Glu-Ams

Enzymatic activity of Glutamyl-Trna Synthetase From Thermus Thermophilus in Complex with Trna(Glu) and An Enzyme Inhibitor, Glu-Ams

All present enzymatic activity of Glutamyl-Trna Synthetase From Thermus Thermophilus in Complex with Trna(Glu) and An Enzyme Inhibitor, Glu-Ams:
6.1.1.17;

Protein crystallography data

The structure of Glutamyl-Trna Synthetase From Thermus Thermophilus in Complex with Trna(Glu) and An Enzyme Inhibitor, Glu-Ams, PDB code: 2cv2 was solved by S.Sekine, S.Yokoyama, Riken Structural Genomics/Proteomicsinitiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.34 / 2.69
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 110.317, 219.822, 135.831, 90.00, 90.00, 90.00
R / Rfree (%) 20 / 26

Other elements in 2cv2:

The structure of Glutamyl-Trna Synthetase From Thermus Thermophilus in Complex with Trna(Glu) and An Enzyme Inhibitor, Glu-Ams also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Glutamyl-Trna Synthetase From Thermus Thermophilus in Complex with Trna(Glu) and An Enzyme Inhibitor, Glu-Ams (pdb code 2cv2). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Glutamyl-Trna Synthetase From Thermus Thermophilus in Complex with Trna(Glu) and An Enzyme Inhibitor, Glu-Ams, PDB code: 2cv2:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 2cv2

Go back to Chlorine Binding Sites List in 2cv2
Chlorine binding site 1 out of 2 in the Glutamyl-Trna Synthetase From Thermus Thermophilus in Complex with Trna(Glu) and An Enzyme Inhibitor, Glu-Ams


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Glutamyl-Trna Synthetase From Thermus Thermophilus in Complex with Trna(Glu) and An Enzyme Inhibitor, Glu-Ams within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl904

b:33.7
occ:1.00
 N A:LYS246 3.5 22.1 1.0
NE2 A:HIS15 3.7 34.8 1.0
NH1 A:ARG247 3.8 73.6 1.0
CA A:SER245 3.9 20.6 1.0
CD2 A:HIS15 4.0 28.6 1.0
CG A:LYS246 4.0 35.3 1.0
OG1 A:THR251 4.0 21.7 1.0
C A:SER245 4.1 22.7 1.0
CD A:LYS246 4.3 42.7 1.0
CB A:LYS246 4.3 29.2 1.0
CB A:SER245 4.3 20.4 1.0
CE A:LYS246 4.5 49.9 1.0
CA A:LYS246 4.5 29.5 1.0
CZ A:ARG247 4.7 71.0 1.0
O A:ILE244 4.7 19.6 1.0
CB A:THR251 4.8 20.1 1.0
CE1 A:HIS15 4.9 28.4 1.0
CG2 A:THR251 4.9 21.0 1.0

Chlorine binding site 2 out of 2 in 2cv2

Go back to Chlorine Binding Sites List in 2cv2
Chlorine binding site 2 out of 2 in the Glutamyl-Trna Synthetase From Thermus Thermophilus in Complex with Trna(Glu) and An Enzyme Inhibitor, Glu-Ams


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Glutamyl-Trna Synthetase From Thermus Thermophilus in Complex with Trna(Glu) and An Enzyme Inhibitor, Glu-Ams within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl903

b:27.3
occ:1.00
 N B:LYS246 3.4 38.5 1.0
CE B:LYS246 3.4 54.8 1.0
O B:HOH1324 3.4 53.5 1.0
NE2 B:HIS15 3.7 34.4 1.0
CB B:LYS246 3.9 44.3 1.0
CA B:SER245 4.0 32.8 1.0
CD2 B:HIS15 4.0 29.8 1.0
C B:SER245 4.2 34.5 1.0
OG1 B:THR251 4.2 25.8 1.0
CA B:LYS246 4.2 42.0 1.0
CG B:LYS246 4.2 48.6 1.0
NZ B:LYS246 4.4 52.1 1.0
CD B:LYS246 4.5 50.0 1.0
CB B:SER245 4.5 33.4 1.0
O B:ILE244 4.8 29.9 1.0
CG2 B:THR251 4.9 26.7 1.0
CB B:THR251 4.9 25.3 1.0
CE1 B:HIS15 4.9 38.1 1.0

Reference:

S.Sekine, M.Shichiri, S.Bernier, R.Chenevert, J.Lapointe, S.Yokoyama. Structural Bases of Transfer Rna-Dependent Amino Acid Recognition and Activation By Glutamyl-Trna Synthetase Structure V. 14 1791 2006.
ISSN: ISSN 0969-2126
PubMed: 17161369
DOI: 10.1016/J.STR.2006.10.005
Page generated: Sat Dec 12 09:02:41 2020

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