Chlorine in PDB 2dc4: Structure of PH1012 Protein From Pyrococcus Horikoshii OT3

The structure of Structure of PH1012 Protein From Pyrococcus Horikoshii OT3, PDB code: 2dc4 was solved by B.Bagautdinov, N.Kunishima, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	26.56 / 1.65
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	53.123, 53.123, 111.147, 90.00, 90.00, 120.00
R / Rfree (%)	21 / 23.6

The binding sites of Chlorine atom in the Structure of PH1012 Protein From Pyrococcus Horikoshii OT3 (pdb code 2dc4). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Structure of PH1012 Protein From Pyrococcus Horikoshii OT3, PDB code: 2dc4:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in the Structure of PH1012 Protein From Pyrococcus Horikoshii OT3


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of PH1012 Protein From Pyrococcus Horikoshii OT3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl501 b:42.4 occ:1.00 N A:TYR159 3.0 19.8 1.0 NZ A:LYS6 3.2 33.0 1.0 O A:HOH516 3.2 28.2 1.0 CD1 A:TYR159 3.5 22.9 1.0 CA A:LEU158 3.5 21.2 1.0 C A:LEU158 3.7 20.6 1.0 CB A:LEU158 3.8 22.6 1.0 CG A:TYR159 3.8 21.1 1.0 CD2 A:LEU158 3.9 27.8 1.0 CB A:TYR159 4.0 21.8 1.0 CE A:LYS6 4.1 28.6 1.0 CA A:TYR159 4.1 20.4 1.0 CE1 A:TYR159 4.1 22.9 1.0 CG A:LEU158 4.5 23.6 1.0 CL A:CL503 4.7 42.8 1.0 CD2 A:TYR159 4.8 23.3 1.0 N A:LEU158 4.8 21.3 1.0 O A:LYS157 4.8 21.3 1.0 O A:LEU158 5.0 20.9 1.0 CZ A:TYR159 5.0 22.0 1.0

Chlorine binding site 2 out of 5 in the Structure of PH1012 Protein From Pyrococcus Horikoshii OT3


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of PH1012 Protein From Pyrococcus Horikoshii OT3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl502 b:46.2 occ:1.00 CL A:CL503 3.3 42.8 1.0 NH2 A:ARG45 3.3 29.8 1.0 O A:HOH605 3.5 41.5 1.0 NH2 A:ARG102 3.5 29.0 1.0 NH1 A:ARG102 3.6 25.8 1.0 O A:HOH530 3.6 30.6 1.0 O A:HOH567 3.7 46.0 1.0 NH2 A:ARG47 3.8 23.4 1.0 NZ A:LYS60 3.8 38.7 1.0 NH1 A:ARG47 3.8 22.8 1.0 CZ A:ARG102 4.0 25.1 1.0 CZ A:ARG45 4.2 26.6 1.0 CZ A:ARG47 4.3 22.4 1.0 NH1 A:ARG45 4.3 28.2 1.0 OE1 A:GLU113 4.3 32.5 1.0 O A:HOH662 4.7 43.8 1.0 OE2 A:GLU113 4.8 33.5 1.0 CE A:LYS60 4.8 37.0 1.0 OE2 A:GLU127 4.9 42.1 1.0 OE2 A:GLU72 5.0 36.2 1.0 CD A:GLU113 5.0 29.4 1.0

Chlorine binding site 3 out of 5 in the Structure of PH1012 Protein From Pyrococcus Horikoshii OT3


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of PH1012 Protein From Pyrococcus Horikoshii OT3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl503 b:42.8 occ:1.00 O A:HOH518 3.0 25.5 1.0 NH2 A:ARG102 3.3 29.0 1.0 NH2 A:ARG47 3.3 23.4 1.0 CL A:CL502 3.3 46.2 1.0 NZ A:LYS100 3.4 31.1 1.0 CD1 A:TYR159 3.5 22.9 1.0 NH1 A:ARG45 3.6 28.2 1.0 CE1 A:TYR159 3.9 22.9 1.0 CE A:LYS100 4.0 29.1 1.0 O A:HOH530 4.0 30.6 1.0 CZ A:ARG45 4.2 26.6 1.0 NH2 A:ARG45 4.3 29.8 1.0 OH A:TYR35 4.3 23.9 1.0 OD2 A:ASP33 4.4 26.9 1.0 CZ A:ARG102 4.5 25.1 1.0 CZ A:ARG47 4.5 22.4 1.0 O A:HOH662 4.6 43.8 1.0 CL A:CL501 4.7 42.4 1.0 CG A:TYR159 4.7 21.1 1.0 NH1 A:ARG102 4.9 25.8 1.0 NH1 A:ARG47 5.0 22.8 1.0

Chlorine binding site 4 out of 5 in the Structure of PH1012 Protein From Pyrococcus Horikoshii OT3


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of PH1012 Protein From Pyrococcus Horikoshii OT3 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl504 b:45.1 occ:1.00 NH2 B:ARG45 3.3 27.9 1.0 CL B:CL505 3.4 46.6 1.0 NH2 B:ARG102 3.6 27.5 1.0 NH1 B:ARG102 3.6 23.9 1.0 O B:HOH696 3.6 30.1 1.0 NH1 B:ARG47 3.7 24.2 1.0 O B:HOH574 3.7 41.4 1.0 NH2 B:ARG47 3.8 24.3 1.0 NZ B:LYS60 4.0 40.3 1.0 CZ B:ARG102 4.0 23.7 1.0 CZ B:ARG47 4.2 24.0 1.0 CZ B:ARG45 4.2 25.8 1.0 NH1 B:ARG45 4.3 28.0 1.0 OE1 B:GLU113 4.5 32.9 1.0 OE2 B:GLU113 4.7 33.1 1.0 OE2 B:GLU127 4.8 42.1 1.0 CE B:LYS60 4.9 37.4 1.0 OE2 B:GLU72 4.9 37.8 1.0

Chlorine binding site 5 out of 5 in the Structure of PH1012 Protein From Pyrococcus Horikoshii OT3


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Structure of PH1012 Protein From Pyrococcus Horikoshii OT3 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl505 b:46.6 occ:1.00 O B:HOH519 3.1 26.6 1.0 NH2 B:ARG102 3.1 27.5 1.0 NH2 B:ARG47 3.2 24.3 1.0 NZ B:LYS100 3.3 31.8 1.0 CL B:CL504 3.4 45.1 1.0 CE B:LYS100 3.5 32.7 1.0 CD1 B:TYR159 3.5 24.0 1.0 NH1 B:ARG45 3.8 28.0 1.0 CE1 B:TYR159 3.9 24.7 1.0 O B:HOH696 4.0 30.1 1.0 OD2 B:ASP33 4.3 25.7 1.0 CZ B:ARG45 4.3 25.8 1.0 CZ B:ARG102 4.4 23.7 1.0 CZ B:ARG47 4.4 24.0 1.0 OH B:TYR35 4.4 24.1 1.0 NH2 B:ARG45 4.5 27.9 1.0 CG B:TYR159 4.7 21.8 1.0 O B:HOH516 4.7 26.8 1.0 CD B:LYS100 4.8 27.9 1.0 NH1 B:ARG102 4.8 23.9 1.0 NH1 B:ARG47 4.9 24.2 1.0

B.Bagautdinov, N.Kunishima. Crystal Structure of PH1012 Protein From Pyrococcus Horikoshii OT3 To Be Published.