Chlorine in PDB 2ess: Crystal Structure of An Acyl-Acp Thioesterase (NP_810988.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.90 A Resolution
Protein crystallography data
The structure of Crystal Structure of An Acyl-Acp Thioesterase (NP_810988.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.90 A Resolution, PDB code: 2ess
was solved by
Joint Center For Structural Genomics (Jcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
30.00 /
1.90
|
Space group
|
P 31 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
91.150,
91.150,
64.770,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
16.6 /
20.6
|
Other elements in 2ess:
The structure of Crystal Structure of An Acyl-Acp Thioesterase (NP_810988.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.90 A Resolution also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of An Acyl-Acp Thioesterase (NP_810988.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.90 A Resolution
(pdb code 2ess). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the
Crystal Structure of An Acyl-Acp Thioesterase (NP_810988.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.90 A Resolution, PDB code: 2ess:
Jump to Chlorine binding site number:
1;
2;
3;
Chlorine binding site 1 out
of 3 in 2ess
Go back to
Chlorine Binding Sites List in 2ess
Chlorine binding site 1 out
of 3 in the Crystal Structure of An Acyl-Acp Thioesterase (NP_810988.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.90 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of An Acyl-Acp Thioesterase (NP_810988.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.90 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl249
b:30.3
occ:1.00
|
OG1
|
A:THR51
|
3.0
|
31.1
|
1.0
|
N
|
A:GLY48
|
3.3
|
29.8
|
1.0
|
CA
|
A:GLY48
|
3.4
|
31.4
|
1.0
|
O
|
A:HOH299
|
3.5
|
34.9
|
1.0
|
N
|
A:THR51
|
3.5
|
29.9
|
1.0
|
C
|
A:GLY48
|
3.6
|
31.2
|
1.0
|
CA
|
A:SER43
|
3.7
|
33.8
|
0.5
|
CA
|
A:SER43
|
3.7
|
34.2
|
0.5
|
O
|
A:GLY48
|
3.8
|
31.0
|
1.0
|
CB
|
A:THR51
|
3.8
|
30.3
|
1.0
|
CB
|
A:ALA50
|
3.8
|
32.7
|
1.0
|
N
|
A:ALA50
|
4.0
|
31.1
|
1.0
|
OG
|
A:SER43
|
4.1
|
39.7
|
0.5
|
CB
|
A:SER43
|
4.1
|
35.2
|
0.5
|
O
|
A:SER43
|
4.1
|
35.4
|
1.0
|
CB
|
A:SER43
|
4.2
|
35.7
|
0.5
|
CA
|
A:THR51
|
4.2
|
27.9
|
1.0
|
CA
|
A:ALA50
|
4.3
|
33.0
|
1.0
|
N
|
A:PHE47
|
4.3
|
28.9
|
1.0
|
C
|
A:ALA50
|
4.3
|
32.8
|
1.0
|
N
|
A:ILE49
|
4.4
|
32.4
|
1.0
|
CA
|
A:GLY46
|
4.4
|
29.2
|
1.0
|
C
|
A:SER43
|
4.4
|
34.1
|
1.0
|
C
|
A:GLY46
|
4.4
|
27.7
|
1.0
|
O
|
A:ALA42
|
4.4
|
31.2
|
1.0
|
C
|
A:PHE47
|
4.5
|
31.5
|
1.0
|
N
|
A:SER43
|
4.6
|
33.4
|
1.0
|
C
|
A:ALA42
|
4.8
|
33.7
|
1.0
|
C
|
A:ILE49
|
4.8
|
32.6
|
1.0
|
CA
|
A:PHE47
|
4.8
|
30.2
|
1.0
|
N
|
A:GLY46
|
4.9
|
30.7
|
1.0
|
|
Chlorine binding site 2 out
of 3 in 2ess
Go back to
Chlorine Binding Sites List in 2ess
Chlorine binding site 2 out
of 3 in the Crystal Structure of An Acyl-Acp Thioesterase (NP_810988.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.90 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of An Acyl-Acp Thioesterase (NP_810988.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.90 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl250
b:30.8
occ:1.00
|
NE
|
A:ARG241
|
3.3
|
54.1
|
1.0
|
N
|
A:ILE151
|
3.3
|
33.7
|
1.0
|
NH1
|
A:ARG63
|
3.3
|
33.7
|
1.0
|
O
|
A:HOH335
|
3.3
|
40.3
|
1.0
|
CB
|
A:ALA204
|
3.5
|
32.3
|
1.0
|
NH2
|
A:ARG241
|
3.6
|
46.7
|
1.0
|
CA
|
A:ARG150
|
3.6
|
36.1
|
0.5
|
CA
|
A:ARG150
|
3.6
|
35.1
|
0.5
|
CG
|
A:ARG150
|
3.7
|
32.0
|
0.5
|
CZ
|
A:ARG241
|
3.9
|
46.0
|
1.0
|
C
|
A:ARG150
|
4.0
|
34.5
|
1.0
|
NH2
|
A:ARG63
|
4.0
|
42.1
|
1.0
|
CZ
|
A:ARG63
|
4.1
|
40.1
|
1.0
|
CB
|
A:ARG150
|
4.2
|
37.0
|
0.5
|
O
|
A:ILE151
|
4.2
|
33.3
|
1.0
|
CB
|
A:ILE151
|
4.2
|
35.6
|
1.0
|
CB
|
A:ARG150
|
4.2
|
35.3
|
0.5
|
CD
|
A:ARG241
|
4.2
|
37.0
|
1.0
|
CA
|
A:ILE151
|
4.2
|
34.3
|
1.0
|
O2
|
A:MPD254
|
4.3
|
75.4
|
1.0
|
CG1
|
A:ILE151
|
4.4
|
39.2
|
1.0
|
CB
|
A:ARG241
|
4.5
|
31.1
|
1.0
|
CG
|
A:ARG150
|
4.6
|
38.0
|
0.5
|
CD1
|
A:ILE151
|
4.7
|
34.2
|
1.0
|
C
|
A:ILE151
|
4.7
|
34.8
|
1.0
|
N
|
A:ARG150
|
4.7
|
35.3
|
1.0
|
O
|
A:SER149
|
4.8
|
35.0
|
1.0
|
CG
|
A:ARG241
|
4.8
|
38.0
|
1.0
|
CD
|
A:ARG150
|
4.9
|
40.8
|
0.5
|
CD
|
A:ARG150
|
4.9
|
27.6
|
0.5
|
CM
|
A:MPD254
|
5.0
|
49.0
|
1.0
|
O
|
A:HOH371
|
5.0
|
40.7
|
1.0
|
|
Chlorine binding site 3 out
of 3 in 2ess
Go back to
Chlorine Binding Sites List in 2ess
Chlorine binding site 3 out
of 3 in the Crystal Structure of An Acyl-Acp Thioesterase (NP_810988.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.90 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of An Acyl-Acp Thioesterase (NP_810988.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.90 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl251
b:44.4
occ:1.00
|
ND1
|
A:HIS18
|
2.9
|
48.0
|
1.0
|
O
|
A:HOH395
|
2.9
|
46.1
|
1.0
|
NE2
|
A:HIS33
|
3.1
|
43.1
|
1.0
|
O
|
A:VAL13
|
3.4
|
39.9
|
1.0
|
N
|
A:GLU15
|
3.6
|
37.1
|
1.0
|
CG
|
A:HIS18
|
3.7
|
43.9
|
1.0
|
CB
|
A:HIS18
|
3.7
|
36.6
|
1.0
|
CG1
|
A:VAL29
|
3.8
|
39.0
|
1.0
|
CD1
|
A:LEU25
|
3.8
|
36.9
|
1.0
|
CE1
|
A:HIS18
|
3.9
|
57.8
|
1.0
|
CE1
|
A:HIS33
|
3.9
|
48.7
|
1.0
|
CA
|
A:ALA14
|
4.0
|
36.6
|
1.0
|
CG
|
A:GLU15
|
4.0
|
46.6
|
1.0
|
CD2
|
A:HIS33
|
4.2
|
49.5
|
1.0
|
CD
|
A:GLU15
|
4.2
|
52.0
|
1.0
|
C
|
A:VAL13
|
4.3
|
38.2
|
1.0
|
C
|
A:ALA14
|
4.3
|
39.2
|
1.0
|
OE2
|
A:GLU15
|
4.4
|
67.9
|
1.0
|
CB
|
A:GLU15
|
4.4
|
42.7
|
1.0
|
N
|
A:ALA14
|
4.6
|
37.3
|
1.0
|
O
|
A:HOH407
|
4.6
|
48.5
|
1.0
|
CA
|
A:GLU15
|
4.6
|
39.9
|
1.0
|
CE1
|
A:PHE78
|
4.7
|
35.1
|
1.0
|
CZ
|
A:PHE78
|
4.7
|
34.7
|
1.0
|
OE1
|
A:GLU15
|
4.8
|
63.1
|
1.0
|
CD2
|
A:HIS18
|
4.9
|
46.4
|
1.0
|
NE2
|
A:HIS18
|
5.0
|
51.1
|
1.0
|
|
Reference:
Joint Center For Structural Genomics (Jcsg),
Joint Center For Structural Genomics (Jcsg).
N/A N/A.
Page generated: Sat Jul 20 06:50:19 2024
|