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Chlorine in PDB 2f4v: 30S Ribosome + Designer Antibiotic

Protein crystallography data

The structure of 30S Ribosome + Designer Antibiotic, PDB code: 2f4v was solved by J.B.Murray, S.O.Meroueh, R.J.Russell, G.Lentzen, J.Haddad, S.Mobashery, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 3.80
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 403.323, 403.323, 176.685, 90.00, 90.00, 90.00
R / Rfree (%) 25.9 / 31.5

Other elements in 2f4v:

The structure of 30S Ribosome + Designer Antibiotic also contains other interesting chemical elements:

Magnesium (Mg) 101 atoms
Potassium (K) 12 atoms
Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 30S Ribosome + Designer Antibiotic (pdb code 2f4v). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the 30S Ribosome + Designer Antibiotic, PDB code: 2f4v:

Chlorine binding site 1 out of 1 in 2f4v

Go back to Chlorine Binding Sites List in 2f4v
Chlorine binding site 1 out of 1 in the 30S Ribosome + Designer Antibiotic


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 30S Ribosome + Designer Antibiotic within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1636

b:76.0
occ:1.00
CL1 A:D2C1636 0.0 76.0 1.0
C10 A:D2C1636 1.8 68.3 1.0
C9 A:D2C1636 2.8 65.3 1.0
C11 A:D2C1636 2.8 67.4 1.0
C8 A:D2C1636 3.1 63.0 1.0
O2 A:D2C1636 3.9 61.3 1.0
C12 A:D2C1636 4.1 65.4 1.0
C14 A:D2C1636 4.1 64.4 1.0
C7 A:D2C1636 4.4 61.1 1.0
N4 A:C1054 4.4 86.4 1.0
C13 A:D2C1636 4.6 64.8 1.0
N3 A:C1054 4.9 83.2 1.0
C4 A:C1054 4.9 85.1 1.0

Reference:

J.B.Murray, S.O.Meroueh, R.J.Russell, G.Lentzen, J.Haddad, S.Mobashery. Interactions of Designer Antibiotics and the Bacterial Ribosome Aminoacyl-Trna Site Chem.Biol. V. 13 129 2006.
ISSN: ISSN 1074-5521
PubMed: 16492561
DOI: 10.1016/J.CHEMBIOL.2005.11.004
Page generated: Sat Jul 20 06:56:21 2024

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