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Chlorine in PDB 2fpo: Putative Methyltransferase Yhhf From Escherichia Coli.

Protein crystallography data

The structure of Putative Methyltransferase Yhhf From Escherichia Coli., PDB code: 2fpo was solved by J.Osipiuk, Y.Kim, R.Sanishvili, T.Skarina, E.Evdokimova, A.Savchenko, A.Edwards, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.76 / 2.05
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 70.504, 96.912, 193.961, 90.00, 92.21, 90.00
R / Rfree (%) 18.3 / 21.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Putative Methyltransferase Yhhf From Escherichia Coli. (pdb code 2fpo). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Putative Methyltransferase Yhhf From Escherichia Coli., PDB code: 2fpo:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 2fpo

Go back to Chlorine Binding Sites List in 2fpo
Chlorine binding site 1 out of 6 in the Putative Methyltransferase Yhhf From Escherichia Coli.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Putative Methyltransferase Yhhf From Escherichia Coli. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:36.1
occ:1.00
 N A:ALA110 3.1 29.4 1.0
NE B:ARG104 3.3 31.8 1.0
CD2 A:LEU134 3.4 33.1 1.0
CB A:ASN109 3.6 28.9 1.0
CG A:MSE111 3.6 41.9 1.0
N A:MSE111 3.6 32.2 1.0
NH1 B:ARG104 3.7 33.3 1.0
CE A:MSE83 3.7 26.3 0.4
CE1 A:PHE60 3.8 28.7 1.0
CA A:ALA110 3.8 30.4 1.0
CB A:ALA110 3.9 30.2 1.0
C A:ASN109 3.9 28.9 1.0
CZ B:ARG104 3.9 31.8 1.0
CA A:ASN109 4.0 29.2 1.0
OD1 A:ASN109 4.0 36.4 1.0
C A:ALA110 4.2 31.4 1.0
CG A:ASN109 4.3 33.1 1.0
CD B:ARG104 4.4 27.8 1.0
CB A:MSE111 4.4 34.7 1.0
CZ A:PHE60 4.5 28.0 1.0
CB B:ARG104 4.5 27.2 1.0
CA A:MSE111 4.6 34.1 1.0
CG A:LEU134 4.6 32.7 1.0
CD1 A:LEU134 4.7 31.9 1.0
CD1 A:PHE60 4.7 27.6 1.0
O A:HOH402 4.9 21.2 1.0
O A:ASN109 4.9 29.4 1.0
SE A:MSE111 5.0 53.0 0.7

Chlorine binding site 2 out of 6 in 2fpo

Go back to Chlorine Binding Sites List in 2fpo
Chlorine binding site 2 out of 6 in the Putative Methyltransferase Yhhf From Escherichia Coli.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Putative Methyltransferase Yhhf From Escherichia Coli. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl402

b:34.4
occ:1.00
 NE C:ARG104 3.2 31.4 1.0
N B:ALA110 3.2 30.0 1.0
NH1 C:ARG104 3.4 28.9 1.0
CD2 B:LEU134 3.4 36.5 1.0
CB B:ASN109 3.5 29.7 1.0
CG B:MSE111 3.5 42.0 1.0
N B:MSE111 3.7 33.1 1.0
CZ C:ARG104 3.8 29.6 1.0
CE1 B:PHE60 3.8 24.7 1.0
ND2 B:ASN109 3.8 29.6 1.0
C B:ASN109 4.0 29.6 1.0
CA B:ALA110 4.0 30.7 1.0
CA B:ASN109 4.1 29.5 1.0
CG B:ASN109 4.1 30.6 1.0
CB B:ALA110 4.1 31.0 1.0
CE B:MSE83 4.1 29.9 0.6
CD1 B:LEU134 4.3 30.7 1.0
CD C:ARG104 4.3 30.3 1.0
CB B:MSE111 4.3 35.5 1.0
C B:ALA110 4.4 32.0 1.0
CZ B:PHE60 4.4 28.3 1.0
CG B:LEU134 4.5 35.1 1.0
CA B:MSE111 4.7 34.6 1.0
CB C:ARG104 4.8 25.1 1.0
CD1 B:PHE60 4.9 26.4 1.0
O B:ASN109 5.0 29.8 1.0

Chlorine binding site 3 out of 6 in 2fpo

Go back to Chlorine Binding Sites List in 2fpo
Chlorine binding site 3 out of 6 in the Putative Methyltransferase Yhhf From Escherichia Coli.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Putative Methyltransferase Yhhf From Escherichia Coli. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl403

b:35.3
occ:1.00
 N C:ALA110 3.3 34.2 1.0
CD2 C:LEU134 3.4 35.2 1.0
CB C:ASN109 3.6 33.3 1.0
N C:MSE111 3.6 35.9 1.0
ND2 C:ASN109 3.8 37.6 1.0
CE1 C:PHE60 3.9 28.8 1.0
CB C:ALA110 4.0 33.5 1.0
C C:ASN109 4.0 33.5 1.0
CA C:ALA110 4.0 34.5 1.0
CG C:ASN109 4.1 35.5 1.0
CA C:ASN109 4.1 33.5 1.0
CG C:MSE111 4.2 42.5 1.0
CE C:MSE111 4.3 47.2 1.0
C C:ALA110 4.3 35.0 1.0
CB C:MSE111 4.4 38.6 1.0
CZ C:PHE60 4.5 28.6 1.0
CD1 C:LEU134 4.5 29.0 1.0
CG C:LEU134 4.5 32.9 1.0
CA C:MSE111 4.6 38.8 1.0
SE C:MSE111 4.9 47.7 0.7
CD1 C:PHE60 4.9 29.2 1.0
O C:HOH407 5.0 22.0 1.0

Chlorine binding site 4 out of 6 in 2fpo

Go back to Chlorine Binding Sites List in 2fpo
Chlorine binding site 4 out of 6 in the Putative Methyltransferase Yhhf From Escherichia Coli.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Putative Methyltransferase Yhhf From Escherichia Coli. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl404

b:36.6
occ:1.00
 N D:ALA110 3.2 29.2 1.0
NE E:ARG104 3.2 31.8 1.0
CD2 D:LEU134 3.4 33.4 1.0
CB D:ASN109 3.5 28.8 1.0
NH1 E:ARG104 3.6 30.1 1.0
CG D:MSE111 3.6 39.8 1.0
N D:MSE111 3.7 31.9 1.0
OD1 D:ASN109 3.8 38.7 1.0
CZ E:ARG104 3.9 31.2 1.0
C D:ASN109 3.9 29.7 1.0
CE1 D:PHE60 3.9 28.6 1.0
CA D:ASN109 3.9 29.8 1.0
CA D:ALA110 4.0 30.2 1.0
CB D:ALA110 4.0 29.7 1.0
CG D:ASN109 4.1 33.3 1.0
CD E:ARG104 4.3 32.4 1.0
C D:ALA110 4.3 30.9 1.0
CB D:MSE111 4.5 34.4 1.0
CB E:ARG104 4.5 29.3 1.0
CD1 D:LEU134 4.6 31.7 1.0
CG D:LEU134 4.7 32.3 1.0
CA D:MSE111 4.7 32.7 1.0
CZ D:PHE60 4.7 26.2 1.0
CD1 D:PHE60 4.8 28.6 1.0
O D:HOH405 4.9 20.4 1.0
SE D:MSE111 4.9 52.1 0.7
O D:ASN109 5.0 31.0 1.0

Chlorine binding site 5 out of 6 in 2fpo

Go back to Chlorine Binding Sites List in 2fpo
Chlorine binding site 5 out of 6 in the Putative Methyltransferase Yhhf From Escherichia Coli.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Putative Methyltransferase Yhhf From Escherichia Coli. within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl405

b:31.9
occ:1.00
 N E:ALA110 3.2 28.5 1.0
NE F:ARG104 3.2 29.6 1.0
CB E:ASN109 3.4 29.6 1.0
NH1 F:ARG104 3.5 30.7 1.0
CG E:MSE111 3.5 38.9 1.0
CD2 E:LEU134 3.5 38.4 1.0
ND2 E:ASN109 3.6 32.9 1.0
N E:MSE111 3.6 30.9 1.0
CE1 E:PHE60 3.8 25.9 1.0
CZ F:ARG104 3.8 29.8 1.0
C E:ASN109 3.9 29.2 1.0
CG E:ASN109 4.0 31.1 1.0
CA E:ASN109 4.0 29.2 1.0
CA E:ALA110 4.0 29.1 1.0
CB E:ALA110 4.1 27.4 1.0
C E:ALA110 4.3 29.7 1.0
CD F:ARG104 4.3 29.1 1.0
CD1 E:LEU134 4.3 31.1 1.0
CB E:MSE111 4.3 32.9 1.0
CZ E:PHE60 4.5 27.5 1.0
CG E:LEU134 4.5 35.0 1.0
CA E:MSE111 4.6 32.2 1.0
CB F:ARG104 4.8 27.1 1.0
CD1 E:PHE60 4.8 24.9 1.0
O E:ASN109 5.0 28.5 1.0
CE E:MSE111 5.0 34.8 1.0

Chlorine binding site 6 out of 6 in 2fpo

Go back to Chlorine Binding Sites List in 2fpo
Chlorine binding site 6 out of 6 in the Putative Methyltransferase Yhhf From Escherichia Coli.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Putative Methyltransferase Yhhf From Escherichia Coli. within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl406

b:35.4
occ:1.00
 N F:ALA110 3.1 33.6 1.0
CB F:ASN109 3.6 32.0 1.0
N F:MSE111 3.6 36.1 1.0
CD2 F:LEU134 3.7 37.1 1.0
ND2 F:ASN109 3.8 37.0 1.0
CE1 F:PHE60 3.8 28.7 1.0
CB F:ALA110 3.9 33.5 1.0
CA F:ALA110 3.9 34.0 1.0
C F:ASN109 3.9 32.6 1.0
CA F:ASN109 4.0 32.2 1.0
CG F:ASN109 4.1 33.3 1.0
CG F:MSE111 4.1 42.7 1.0
CE F:MSE111 4.2 51.2 1.0
C F:ALA110 4.3 35.1 1.0
CZ F:PHE60 4.4 31.3 1.0
CD1 F:LEU134 4.4 33.2 1.0
CB F:MSE111 4.4 38.6 1.0
CG F:LEU134 4.6 34.6 1.0
CA F:MSE111 4.6 39.3 1.0
CD1 F:PHE60 4.9 27.9 1.0
SE F:MSE111 4.9 49.3 0.7
O F:ASN109 5.0 32.5 1.0

Reference:

D.V.Lesnyak, J.Osipiuk, T.Skarina, P.V.Sergiev, A.A.Bogdanov, A.Edwards, A.Savchenko, A.Joachimiak, O.A.Dontsova. Methyltransferase That Modifies Guanine 966 of the 16 S Rrna: Functional Identification and Tertiary Structure. J.Biol.Chem. V. 282 5880 2007.
ISSN: ISSN 0021-9258
PubMed: 17189261
DOI: 10.1074/JBC.M608214200
Page generated: Sat Jul 20 07:10:51 2024

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