Atomistry » Chlorine » PDB 2fs7-2g7z » 2g4o
Atomistry »
  Chlorine »
    PDB 2fs7-2g7z »
      2g4o »

Chlorine in PDB 2g4o: Anomalous Substructure of 3-Isopropylmalate Dehydrogenase

Enzymatic activity of Anomalous Substructure of 3-Isopropylmalate Dehydrogenase

All present enzymatic activity of Anomalous Substructure of 3-Isopropylmalate Dehydrogenase:
1.1.1.85;

Protein crystallography data

The structure of Anomalous Substructure of 3-Isopropylmalate Dehydrogenase, PDB code: 2g4o was solved by C.Mueller-Dieckmann, M.S.Weiss, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 78.570, 98.580, 184.030, 90.00, 90.00, 90.00
R / Rfree (%) 20.9 / 26

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Anomalous Substructure of 3-Isopropylmalate Dehydrogenase (pdb code 2g4o). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Anomalous Substructure of 3-Isopropylmalate Dehydrogenase, PDB code: 2g4o:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 2g4o

Go back to Chlorine Binding Sites List in 2g4o
Chlorine binding site 1 out of 6 in the Anomalous Substructure of 3-Isopropylmalate Dehydrogenase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Anomalous Substructure of 3-Isopropylmalate Dehydrogenase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl803

b:35.2
occ:0.50
O A:HOH859 2.9 40.6 1.0
NH1 A:ARG165 3.1 53.3 1.0
NH2 A:ARG168 3.2 65.1 1.0
CD A:ARG165 3.7 44.4 1.0
CG A:ARG165 3.8 42.4 1.0
CZ A:ARG165 4.1 46.4 1.0
CB A:ARG165 4.2 43.6 1.0
CD A:ARG169 4.2 46.3 1.0
NE A:ARG165 4.3 43.4 1.0
O A:HOH852 4.3 43.2 1.0
CG1 A:VAL118 4.4 49.6 1.0
CD1 A:LEU96 4.4 41.9 1.0
CG2 A:VAL118 4.5 47.0 1.0
CZ A:ARG168 4.5 59.7 1.0
CB A:VAL118 4.9 41.3 1.0
CG A:ARG169 5.0 46.7 1.0

Chlorine binding site 2 out of 6 in 2g4o

Go back to Chlorine Binding Sites List in 2g4o
Chlorine binding site 2 out of 6 in the Anomalous Substructure of 3-Isopropylmalate Dehydrogenase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Anomalous Substructure of 3-Isopropylmalate Dehydrogenase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl804

b:27.1
occ:0.40
O A:HOH830 3.1 36.5 1.0
N A:ILE68 3.1 42.7 1.0
CA A:ALA67 3.6 40.9 1.0
C A:ALA67 3.9 41.7 1.0
O A:ILE68 3.9 44.0 1.0
CB A:ALA67 4.0 40.5 1.0
CA A:ILE68 4.1 43.4 1.0
O A:HIS270 4.1 41.1 1.0
CA A:GLY271 4.2 43.4 1.0
OE1 A:GLU267 4.2 53.2 1.0
O A:HOH910 4.2 42.3 1.0
CD1 A:LEU83 4.3 51.2 1.0
CB A:ILE68 4.3 44.2 1.0
C A:ILE68 4.4 44.2 1.0
CD2 A:LEU65 4.7 40.7 1.0
CG1 A:ILE68 4.8 46.3 1.0
O A:GLY66 4.8 38.2 1.0
N A:ALA67 4.8 40.3 1.0
C A:HIS270 4.9 43.5 1.0
C A:GLY271 4.9 44.7 1.0

Chlorine binding site 3 out of 6 in 2g4o

Go back to Chlorine Binding Sites List in 2g4o
Chlorine binding site 3 out of 6 in the Anomalous Substructure of 3-Isopropylmalate Dehydrogenase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Anomalous Substructure of 3-Isopropylmalate Dehydrogenase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl807

b:53.9
occ:0.35
O A:HOH906 3.5 45.7 1.0
NH2 A:ARG121 3.7 45.5 1.0
OD1 A:ASP235 3.8 50.4 1.0
NH1 A:ARG97 4.2 43.9 0.4
NH2 A:ARG87 4.4 83.7 1.0
NH1 A:ARG87 4.6 83.5 1.0
CZ A:ARG121 4.7 44.8 1.0
NH1 A:ARG121 4.9 47.3 1.0
CG A:ASP235 5.0 48.2 1.0
CZ A:ARG87 5.0 80.8 1.0

Chlorine binding site 4 out of 6 in 2g4o

Go back to Chlorine Binding Sites List in 2g4o
Chlorine binding site 4 out of 6 in the Anomalous Substructure of 3-Isopropylmalate Dehydrogenase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Anomalous Substructure of 3-Isopropylmalate Dehydrogenase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl805

b:46.5
occ:0.37
CD B:ARG165 3.4 53.9 1.0
CG B:ARG165 3.6 52.7 1.0
CD B:ARG169 3.7 58.4 1.0
NH1 B:ARG165 3.8 66.8 1.0
CB B:ARG165 3.9 54.7 1.0
NH1 B:ARG168 4.0 80.3 1.0
CG2 B:VAL118 4.0 56.3 1.0
CG1 B:VAL118 4.3 52.7 1.0
NE B:ARG165 4.4 50.8 1.0
CB B:VAL118 4.5 50.8 1.0
CD1 B:LEU96 4.5 43.7 1.0
CZ B:ARG165 4.6 61.4 1.0
CG B:ARG169 4.6 56.4 1.0
CA B:ARG165 4.7 54.9 1.0
NH2 B:ARG168 4.8 81.1 1.0
NE B:ARG169 4.9 55.6 1.0
CZ B:ARG168 4.9 83.4 1.0
O B:ARG165 5.0 57.0 1.0
NH1 B:ARG169 5.0 55.0 1.0

Chlorine binding site 5 out of 6 in 2g4o

Go back to Chlorine Binding Sites List in 2g4o
Chlorine binding site 5 out of 6 in the Anomalous Substructure of 3-Isopropylmalate Dehydrogenase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Anomalous Substructure of 3-Isopropylmalate Dehydrogenase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl806

b:34.1
occ:0.35
O C:HOH835 2.8 42.8 1.0
NH1 C:ARG165 3.5 36.0 1.0
CD C:ARG165 3.5 35.0 1.0
O C:HOH949 3.6 58.5 1.0
NH1 C:ARG168 3.8 48.0 0.5
CG C:ARG165 3.8 32.1 1.0
CD C:ARG169 3.9 38.7 1.0
CB C:ARG165 4.0 35.8 1.0
CG2 C:VAL118 4.1 41.8 1.0
O C:HOH864 4.2 37.8 1.0
CG1 C:VAL118 4.3 40.6 1.0
CD1 C:LEU96 4.4 38.9 1.0
NE C:ARG165 4.4 38.1 1.0
CZ C:ARG165 4.4 36.1 1.0
CB C:VAL118 4.6 34.3 1.0
CG C:ARG169 4.7 38.6 1.0
CZ C:ARG168 4.7 46.9 0.5
NH2 C:ARG168 4.8 41.8 0.5
CA C:ARG165 4.9 35.9 1.0
NE C:ARG169 5.0 33.3 1.0

Chlorine binding site 6 out of 6 in 2g4o

Go back to Chlorine Binding Sites List in 2g4o
Chlorine binding site 6 out of 6 in the Anomalous Substructure of 3-Isopropylmalate Dehydrogenase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Anomalous Substructure of 3-Isopropylmalate Dehydrogenase within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl808

b:32.8
occ:0.35
O D:HOH916 3.0 52.4 1.0
NH1 D:ARG165 3.2 43.3 1.0
CD D:ARG165 3.6 37.3 1.0
CG D:ARG165 3.7 37.1 1.0
CB D:ARG165 4.1 38.6 1.0
O D:HOH915 4.1 55.1 1.0
CZ D:ARG165 4.2 42.5 1.0
CD D:ARG169 4.3 38.2 1.0
CD1 D:LEU96 4.3 37.6 1.0
CG1 D:VAL118 4.3 36.4 1.0
NE D:ARG165 4.4 36.1 1.0
CG2 D:VAL118 4.4 38.5 1.0
O D:HOH828 4.5 44.4 1.0
CB D:VAL118 4.8 31.8 1.0
CD2 D:LEU96 4.8 34.4 1.0
CA D:ARG165 4.9 37.4 1.0
CG D:ARG169 5.0 37.6 1.0

Reference:

C.Mueller-Dieckmann, S.Panjikar, A.Schmidt, S.Mueller, J.Kuper, A.Geerlof, M.Wilmanns, R.K.Singh, P.A.Tucker, M.S.Weiss. On the Routine Use of Soft X-Rays in Macromolecular Crystallography. Part IV. Efficient Determination of Anomalous Substructures in Biomacromolecules Using Longer X-Ray Wavelengths. Acta Crystallogr.,Sect.D V. 63 366 2007.
ISSN: ISSN 0907-4449
PubMed: 17327674
DOI: 10.1107/S0907444906055624
Page generated: Sat Jul 20 07:18:33 2024

Last articles

As in 1BEH
As in 1B9D
As in 1B92
As in 1B9F
Ar in 7Q38
Ar in 6QAR
Ar in 6R1Q
Ar in 7Q09
Ar in 7PWN
Ar in 7PUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy