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Chlorine in PDB 2g4p: Anomalous Substructure of Lysozyme at pH 4.5

Enzymatic activity of Anomalous Substructure of Lysozyme at pH 4.5

All present enzymatic activity of Anomalous Substructure of Lysozyme at pH 4.5:
3.2.1.17;

Protein crystallography data

The structure of Anomalous Substructure of Lysozyme at pH 4.5, PDB code: 2g4p was solved by C.Mueller-Dieckmann, M.S.Weiss, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.84
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.660, 78.660, 37.120, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 21.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Anomalous Substructure of Lysozyme at pH 4.5 (pdb code 2g4p). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the Anomalous Substructure of Lysozyme at pH 4.5, PDB code: 2g4p:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7;

Chlorine binding site 1 out of 7 in 2g4p

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Chlorine binding site 1 out of 7 in the Anomalous Substructure of Lysozyme at pH 4.5


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Anomalous Substructure of Lysozyme at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl200

b:21.7
occ:0.95
 O A:HOH301 3.0 33.4 1.0
OH A:TYR23 3.1 20.4 1.0
O A:HOH227 3.2 19.4 1.0
CE2 A:TYR23 3.7 20.5 1.0
CZ A:TYR23 3.7 19.5 1.0
CA A:GLY104 4.2 21.7 1.0
O A:ARG21 4.5 20.6 1.0
N A:GLY104 4.7 20.4 1.0
CE1 A:TYR23 4.9 19.6 1.0
CD2 A:TYR23 4.9 19.9 1.0

Chlorine binding site 2 out of 7 in 2g4p

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Chlorine binding site 2 out of 7 in the Anomalous Substructure of Lysozyme at pH 4.5


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Anomalous Substructure of Lysozyme at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:20.7
occ:0.70
 O A:HOH323 3.1 31.5 1.0
N A:THR69 3.1 21.7 1.0
O A:HOH210 3.1 19.9 1.0
O A:THR69 3.4 20.1 1.0
O A:HOH283 3.4 28.6 1.0
O A:HOH333 3.5 38.6 1.0
C A:GLY67 3.5 20.7 1.0
OG A:SER72 3.5 29.4 1.0
CA A:GLY67 3.5 21.0 1.0
N A:ARG68 3.5 20.6 1.0
OD1 A:ASN65 3.6 24.2 1.0
N A:GLY67 3.7 20.3 1.0
C A:THR69 3.7 23.4 1.0
CA A:THR69 3.9 22.9 1.0
O A:HOH237 3.9 22.1 1.0
C A:ARG68 4.1 22.9 1.0
O A:GLY67 4.2 20.6 1.0
CB A:THR69 4.2 23.0 1.0
OD1 A:ASP66 4.3 19.4 1.0
CA A:ARG68 4.3 22.1 1.0
N A:PRO70 4.6 24.5 1.0
O A:HOH207 4.7 24.3 1.0
C A:ASP66 4.7 20.7 1.0
OG1 A:THR69 4.8 18.3 1.0
CG A:ASN65 4.8 24.9 1.0
CB A:SER72 4.8 30.5 1.0
N A:ASP66 4.8 20.9 1.0
O A:HOH243 4.9 22.4 0.5

Chlorine binding site 3 out of 7 in 2g4p

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Chlorine binding site 3 out of 7 in the Anomalous Substructure of Lysozyme at pH 4.5


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Anomalous Substructure of Lysozyme at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:19.1
occ:0.65
 OG A:SER24 3.1 23.7 1.0
N A:GLY26 3.3 22.6 1.0
CB A:SER24 3.5 22.4 1.0
CA A:GLY26 3.5 22.9 1.0
CA A:GLN121 3.6 24.4 1.0
CD1 A:ILE124 3.8 29.7 1.0
CB A:GLN121 3.9 25.7 1.0
N A:GLN121 4.0 24.4 1.0
CG1 A:ILE124 4.1 26.5 1.0
O A:VAL120 4.1 24.2 1.0
CG A:GLN121 4.2 28.7 1.0
C A:VAL120 4.2 23.7 1.0
CG2 A:VAL120 4.4 27.5 1.0
N A:LEU25 4.5 23.9 1.0
C A:SER24 4.5 22.5 1.0
C A:LEU25 4.5 23.3 1.0
C A:GLY26 4.6 23.0 1.0
CA A:SER24 4.6 22.7 1.0
N A:ASN27 4.7 23.0 1.0
C A:GLN121 4.9 23.3 1.0
CA A:LEU25 4.9 24.1 1.0
O A:SER24 5.0 20.2 1.0

Chlorine binding site 4 out of 7 in 2g4p

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Chlorine binding site 4 out of 7 in the Anomalous Substructure of Lysozyme at pH 4.5


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Anomalous Substructure of Lysozyme at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:23.2
occ:0.60
 O A:HOH325 3.2 38.1 1.0
CE2 A:PHE38 3.5 25.0 1.0
CZ3 A:TRP123 4.0 24.4 1.0
NZ A:LYS33 4.0 29.9 1.0
CD A:ARG5 4.2 22.1 1.0
CB A:ARG5 4.2 24.5 1.0
CE A:LYS33 4.2 30.1 1.0
CZ A:PHE38 4.3 27.7 1.0
CD2 A:PHE38 4.4 24.4 1.0
CD A:LYS33 4.5 27.7 1.0
CG A:ARG5 4.6 22.5 1.0
NE A:ARG5 4.7 24.1 1.0
CE3 A:TRP123 4.8 25.7 1.0
CH2 A:TRP123 4.9 27.0 1.0

Chlorine binding site 5 out of 7 in 2g4p

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Chlorine binding site 5 out of 7 in the Anomalous Substructure of Lysozyme at pH 4.5


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Anomalous Substructure of Lysozyme at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:19.6
occ:0.50
 N A:ILE88 3.2 23.8 1.0
O A:HOH240 3.4 35.7 1.0
O A:HOH316 3.4 33.9 1.0
CA A:ASP87 3.6 24.4 1.0
CE1 A:HIS15 3.7 28.0 1.0
CG1 A:ILE88 3.8 23.4 1.0
C A:ASP87 4.0 22.7 1.0
CB A:ALA11 4.1 23.6 1.0
OD1 A:ASP87 4.1 23.0 1.0
CG A:ASP87 4.1 26.9 1.0
O A:SER86 4.2 27.1 1.0
CA A:ILE88 4.3 23.5 1.0
CB A:ILE88 4.3 23.4 1.0
CG2 A:ILE88 4.3 25.5 1.0
CZ A:PHE3 4.3 26.1 1.0
ND1 A:HIS15 4.4 25.5 1.0
CB A:ASP87 4.4 25.4 1.0
O A:HOH342 4.5 38.4 1.0
OD2 A:ASP87 4.5 31.2 1.0
NE2 A:HIS15 4.5 30.2 1.0
CD1 A:ILE88 4.7 24.9 1.0
N A:ASP87 4.7 24.9 1.0
CE2 A:PHE3 4.9 25.9 1.0
C A:SER86 4.9 26.4 1.0

Chlorine binding site 6 out of 7 in 2g4p

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Chlorine binding site 6 out of 7 in the Anomalous Substructure of Lysozyme at pH 4.5


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Anomalous Substructure of Lysozyme at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:17.9
occ:0.35
 O A:HOH263 2.9 30.1 1.0
ND2 A:ASN65 3.3 25.7 1.0
CA A:PRO79 3.7 22.5 1.0
CB A:ASN65 3.8 21.6 1.0
CB A:PRO79 3.9 21.9 1.0
N A:PRO79 4.0 23.2 1.0
CG A:PRO79 4.0 24.7 1.0
CG A:ASN65 4.0 24.9 1.0
CD A:PRO79 4.2 22.9 1.0
O A:ASN65 4.2 17.6 1.0
C A:ILE78 4.6 24.2 1.0
O A:ILE78 4.8 21.7 1.0
C A:ASN65 4.9 20.3 1.0
CA A:ASN65 4.9 21.3 1.0
ND2 A:ASN74 4.9 24.2 1.0

Chlorine binding site 7 out of 7 in 2g4p

Go back to Chlorine Binding Sites List in 2g4p
Chlorine binding site 7 out of 7 in the Anomalous Substructure of Lysozyme at pH 4.5


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Anomalous Substructure of Lysozyme at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:19.2
occ:0.25
 O A:HOH328 2.9 44.9 1.0
N A:ARG128 3.2 26.0 1.0
CA A:CYS127 3.7 24.6 1.0
CB A:ARG128 3.8 29.4 1.0
CB A:CYS6 3.9 22.2 1.0
C A:CYS127 3.9 23.6 1.0
O A:GLY126 4.1 23.1 1.0
CA A:ARG128 4.1 29.2 1.0
SG A:CYS6 4.2 23.2 1.0
CB A:CYS127 4.4 24.0 1.0
O A:ARG128 4.5 34.7 1.0
C A:ARG128 4.8 32.7 1.0
N A:CYS127 4.8 22.4 1.0
C A:GLY126 4.9 23.6 1.0

Reference:

C.Mueller-Dieckmann, S.Panjikar, A.Schmidt, S.Mueller, J.Kuper, A.Geerlof, M.Wilmanns, R.K.Singh, P.A.Tucker, M.S.Weiss. On the Routine Use of Soft X-Rays in Macromolecular Crystallography. Part IV. Efficient Determination of Anomalous Substructures in Biomacromolecules Using Longer X-Ray Wavelengths. Acta Crystallogr.,Sect.D V. 63 366 2007.
ISSN: ISSN 0907-4449
PubMed: 17327674
DOI: 10.1107/S0907444906055624
Page generated: Sat Jul 20 07:18:35 2024

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