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Chlorine in PDB 2g4x: Anomalous Substructure Od Ribonuclease A (P3221)

Enzymatic activity of Anomalous Substructure Od Ribonuclease A (P3221)

All present enzymatic activity of Anomalous Substructure Od Ribonuclease A (P3221):
3.1.27.5;

Protein crystallography data

The structure of Anomalous Substructure Od Ribonuclease A (P3221), PDB code: 2g4x was solved by C.Mueller-Dieckmann, M.S.Weiss, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.95
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 64.320, 64.320, 63.740, 90.00, 90.00, 120.00
R / Rfree (%) 17.5 / 22.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Anomalous Substructure Od Ribonuclease A (P3221) (pdb code 2g4x). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Anomalous Substructure Od Ribonuclease A (P3221), PDB code: 2g4x:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 2g4x

Go back to Chlorine Binding Sites List in 2g4x
Chlorine binding site 1 out of 5 in the Anomalous Substructure Od Ribonuclease A (P3221)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Anomalous Substructure Od Ribonuclease A (P3221) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl125

b:24.0
occ:0.75
N A:THR78 3.3 22.1 1.0
OG1 A:THR78 3.6 23.9 1.0
CA A:SER77 3.8 22.4 1.0
CG2 A:THR78 3.9 27.5 1.0
CB A:SER77 3.9 23.1 1.0
C A:SER77 4.1 21.9 1.0
CB A:THR78 4.2 23.5 1.0
CA A:THR78 4.3 23.5 1.0
O A:TYR76 4.8 21.4 1.0
NE2 A:HIS105 4.8 27.1 1.0

Chlorine binding site 2 out of 5 in 2g4x

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Chlorine binding site 2 out of 5 in the Anomalous Substructure Od Ribonuclease A (P3221)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Anomalous Substructure Od Ribonuclease A (P3221) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl126

b:21.5
occ:0.70
OG1 A:THR3 3.0 20.2 1.0
O A:HOH161 3.1 27.2 1.0
CB A:THR3 3.9 17.2 1.0
CG2 A:THR3 4.0 21.1 1.0
N A:ALA6 4.2 19.5 1.0
CB A:ALA5 4.2 20.8 1.0
CB A:ALA6 4.3 20.2 1.0
CA A:ALA6 4.7 19.5 1.0
C A:ALA5 4.8 18.5 1.0
O A:HOH155 4.9 22.0 1.0
CA A:ALA5 5.0 19.2 1.0

Chlorine binding site 3 out of 5 in 2g4x

Go back to Chlorine Binding Sites List in 2g4x
Chlorine binding site 3 out of 5 in the Anomalous Substructure Od Ribonuclease A (P3221)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Anomalous Substructure Od Ribonuclease A (P3221) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl127

b:17.3
occ:0.60
N A:THR45 3.3 25.1 1.0
NE2 A:HIS12 3.6 26.9 1.0
CA A:ASN44 3.7 24.5 1.0
OG1 A:THR45 3.7 24.5 1.0
C A:ASN44 3.9 25.4 1.0
CD1 A:PHE120 3.9 30.3 1.0
CB A:THR45 4.0 26.4 1.0
CD2 A:HIS12 4.2 17.0 1.0
CA A:THR45 4.2 24.7 1.0
O A:VAL43 4.3 24.4 1.0
CB A:PHE120 4.4 28.7 1.0
N A:ASN44 4.4 23.3 1.0
NZ A:LYS41 4.4 33.7 1.0
CG A:PHE120 4.4 25.9 1.0
OD1 A:ASN44 4.5 27.7 1.0
C A:VAL43 4.6 23.8 1.0
CE1 A:HIS12 4.6 21.0 1.0
CE1 A:PHE120 4.7 31.2 1.0
CG1 A:VAL43 4.7 27.5 1.0
O A:PHE120 4.7 29.6 1.0
CB A:ASN44 4.9 25.0 1.0
CG A:ASN44 4.9 25.5 1.0
O A:THR45 5.0 22.1 1.0
O A:ASN44 5.0 26.5 1.0

Chlorine binding site 4 out of 5 in 2g4x

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Chlorine binding site 4 out of 5 in the Anomalous Substructure Od Ribonuclease A (P3221)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Anomalous Substructure Od Ribonuclease A (P3221) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl128

b:25.9
occ:0.45
N A:ASN113 3.0 29.1 1.0
CA A:GLY112 3.6 27.0 1.0
O A:ASN113 3.7 27.9 1.0
C A:GLY112 3.8 26.4 1.0
CA A:ASN113 4.0 28.7 1.0
C A:ASN113 4.2 29.2 1.0
CB A:ASN113 4.2 29.8 1.0
O A:HOH160 4.4 22.6 1.0
N A:GLY112 4.9 26.0 1.0
O A:GLY112 4.9 24.4 1.0

Chlorine binding site 5 out of 5 in 2g4x

Go back to Chlorine Binding Sites List in 2g4x
Chlorine binding site 5 out of 5 in the Anomalous Substructure Od Ribonuclease A (P3221)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Anomalous Substructure Od Ribonuclease A (P3221) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl129

b:17.8
occ:0.45
O A:HOH156 2.9 20.1 1.0
CB A:SER15 3.8 24.9 1.0
CB A:SER50 3.9 24.4 1.0
CA A:SER50 4.1 23.8 1.0
O A:SER15 4.2 32.7 1.0
OG A:SER15 4.5 24.1 1.0
N A:SER50 4.7 24.3 1.0
O A:HOH154 4.8 21.8 1.0
CA A:SER15 4.9 26.6 1.0
C A:SER15 4.9 29.1 1.0

Reference:

C.Mueller-Dieckmann, S.Panjikar, A.Schmidt, S.Mueller, J.Kuper, A.Geerlof, M.Wilmanns, R.K.Singh, P.A.Tucker, M.S.Weiss. On the Routine Use of Soft X-Rays in Macromolecular Crystallography. Part IV. Efficient Determination of Anomalous Substructures in Biomacromolecules Using Longer X-Ray Wavelengths. Acta Crystallogr.,Sect.D V. 63 366 2007.
ISSN: ISSN 0907-4449
PubMed: 17327674
DOI: 10.1107/S0907444906055624
Page generated: Sat Dec 12 09:05:42 2020

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