Chlorine in PDB 2gcl: Structure of the POB3 Middle Domain

The structure of Structure of the POB3 Middle Domain, PDB code: 2gcl was solved by A.P.Vandemark, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.21
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	57.110, 57.770, 156.580, 90.00, 90.00, 90.00
R / Rfree (%)	20.7 / 26.4

The binding sites of Chlorine atom in the Structure of the POB3 Middle Domain (pdb code 2gcl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Structure of the POB3 Middle Domain, PDB code: 2gcl:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Structure of the POB3 Middle Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the POB3 Middle Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl479 b:70.7 occ:1.00 CE A:LYS346 3.8 26.1 1.0 CD2 A:HIS359 4.3 28.3 1.0 NZ A:LYS346 4.4 28.6 1.0 CG A:HIS359 4.5 24.8 1.0 CG2 A:ILE355 4.5 22.5 1.0 OE2 B:GLU339 4.6 84.3 1.0 CB A:HIS359 4.8 20.5 1.0 NE2 A:HIS359 4.8 32.4 1.0 CE1 A:TYR349 4.9 17.0 1.0

Chlorine binding site 2 out of 4 in the Structure of the POB3 Middle Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of the POB3 Middle Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl480 b:27.5 occ:1.00 O A:HOH483 3.0 18.5 1.0 NH2 A:ARG256 3.3 24.1 1.0 OE1 A:GLN321 3.3 34.9 1.0 O A:HOH600 3.3 27.4 1.0 O A:HOH486 3.8 19.4 1.0 CB A:PHE249 3.9 17.0 1.0 NE2 A:GLN321 4.1 30.5 1.0 CD A:GLN321 4.1 30.9 1.0 CZ A:ARG256 4.2 27.4 1.0 NH1 A:ARG256 4.3 29.6 1.0 O A:GLN319 4.3 21.1 1.0 N A:PHE249 4.6 15.9 1.0 OE1 A:GLU324 4.6 32.1 0.5 O A:HOH527 4.8 25.4 1.0 CG A:PHE249 4.9 19.4 1.0 CA A:PHE249 4.9 16.3 1.0 O A:ASP247 5.0 21.2 1.0 O A:HOH608 5.0 28.0 1.0

Chlorine binding site 3 out of 4 in the Structure of the POB3 Middle Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of the POB3 Middle Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl481 b:37.0 occ:1.00 N A:ASN264 3.1 20.2 1.0 OG A:SER265 3.2 19.9 1.0 O A:HOH524 3.3 54.8 1.0 N A:SER265 3.4 19.4 1.0 CA A:ASN264 3.5 20.7 1.0 CB A:ASN264 3.5 21.8 1.0 C A:ASN264 3.6 19.9 1.0 CB A:TYR262 3.6 20.0 1.0 CB A:SER265 3.8 20.3 1.0 N A:LYS263 4.0 20.5 1.0 CA A:SER265 4.2 19.8 1.0 CG A:LYS263 4.2 25.9 1.0 C A:LYS263 4.3 21.2 1.0 O A:ASN264 4.4 20.5 1.0 C A:TYR262 4.5 19.4 1.0 CG A:TYR262 4.6 20.5 1.0 CA A:LYS263 4.6 21.4 1.0 CA A:TYR262 4.7 19.4 1.0 CG A:ASN264 4.8 23.1 1.0 O A:HOH490 4.9 20.1 1.0

Chlorine binding site 4 out of 4 in the Structure of the POB3 Middle Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of the POB3 Middle Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl482 b:72.7 occ:1.00 O A:ARG256 3.5 19.1 1.0 O A:ARG269 4.0 18.6 1.0 C A:ARG256 4.1 19.8 1.0 OD2 A:ASP258 4.4 20.6 1.0 N A:LYS271 4.5 22.9 1.0 CA A:TYR257 4.5 17.9 1.0 CB A:ARG256 4.5 22.0 1.0 N A:ASP258 4.5 18.2 1.0 N A:TYR257 4.5 17.9 1.0 CA A:GLY270 4.6 19.7 1.0 C A:GLY270 4.6 22.3 1.0 OD1 A:ASP247 4.7 28.5 1.0 C A:TYR257 4.7 18.1 1.0 CG A:ASP258 4.9 23.3 1.0 CA A:ARG256 4.9 20.5 1.0

A.P.Vandemark, M.Blanksma, E.Ferris, A.Heroux, C.P.Hill, T.Formosa. The Structure of the Yfact POB3-M Domain, Its Interaction with the Dna Replication Factor Rpa, and A Potential Role in Nucleosome Deposition. Mol.Cell V. 22 363 2006.
ISSN: ISSN 1097-2765
PubMed: 16678108
DOI: 10.1016/J.MOLCEL.2006.03.025