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Chlorine in PDB 2gez: Crystal Structure of Potassium-Independent Plant Asparaginase

Enzymatic activity of Crystal Structure of Potassium-Independent Plant Asparaginase

All present enzymatic activity of Crystal Structure of Potassium-Independent Plant Asparaginase:
3.5.1.1;

Protein crystallography data

The structure of Crystal Structure of Potassium-Independent Plant Asparaginase, PDB code: 2gez was solved by K.Michalska, G.Bujacz, M.Jaskolski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 2.60
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 47.680, 60.200, 114.630, 100.60, 92.90, 113.40
R / Rfree (%) 18.9 / 25.4

Other elements in 2gez:

The structure of Crystal Structure of Potassium-Independent Plant Asparaginase also contains other interesting chemical elements:

Sodium (Na) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Potassium-Independent Plant Asparaginase (pdb code 2gez). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of Potassium-Independent Plant Asparaginase, PDB code: 2gez:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 2gez

Go back to Chlorine Binding Sites List in 2gez
Chlorine binding site 1 out of 6 in the Crystal Structure of Potassium-Independent Plant Asparaginase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Potassium-Independent Plant Asparaginase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl406

b:39.2
occ:1.00
 NH1 B:ARG221 3.0 21.5 1.0
NH2 B:ARG221 3.1 28.1 1.0
CZ B:ARG221 3.5 25.6 1.0
O A:HOH483 3.5 29.4 1.0
C B:GLY213 3.7 28.3 1.0
CD1 B:LEU214 3.7 32.8 1.0
CA B:GLY213 3.8 27.8 1.0
N B:GLY246 3.8 26.0 1.0
CA B:GLY246 3.9 25.0 1.0
O B:GLY213 3.9 28.8 1.0
O B:GLY244 4.0 28.2 1.0
N B:LEU214 4.0 28.3 1.0
O B:HOH501 4.2 35.9 1.0
OD1 B:ASP224 4.3 31.4 1.0
CB B:LEU214 4.4 29.0 1.0
CA B:GLY223 4.6 25.0 1.0
CA B:LEU214 4.6 28.3 1.0
CG B:LEU214 4.7 31.1 1.0
NE B:ARG221 4.8 25.5 1.0
N B:GLY213 5.0 27.6 1.0

Chlorine binding site 2 out of 6 in 2gez

Go back to Chlorine Binding Sites List in 2gez
Chlorine binding site 2 out of 6 in the Crystal Structure of Potassium-Independent Plant Asparaginase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Potassium-Independent Plant Asparaginase within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl405

b:28.9
occ:1.00
 N D:ILE321 3.2 23.0 1.0
N D:TRP322 3.3 23.2 1.0
CE3 D:TRP322 3.6 21.1 1.0
O D:TRP322 3.9 25.1 1.0
CA D:ILE321 4.0 22.6 1.0
CA D:ALA320 4.0 25.1 1.0
C D:ILE321 4.1 22.7 1.0
C D:ALA320 4.1 24.1 1.0
CA D:TRP322 4.2 24.0 1.0
CB D:ILE321 4.2 22.2 1.0
CZ3 D:TRP322 4.3 23.5 1.0
CB D:TRP322 4.3 23.5 1.0
CB D:ALA320 4.3 24.8 1.0
C D:TRP322 4.4 25.2 1.0
CD2 D:TRP322 4.5 21.1 1.0
CG D:TRP322 4.8 23.2 1.0

Chlorine binding site 3 out of 6 in 2gez

Go back to Chlorine Binding Sites List in 2gez
Chlorine binding site 3 out of 6 in the Crystal Structure of Potassium-Independent Plant Asparaginase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Potassium-Independent Plant Asparaginase within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl407

b:26.5
occ:1.00
 NH2 D:ARG221 3.1 26.4 1.0
NH1 D:ARG221 3.2 23.2 1.0
CD1 D:LEU214 3.4 31.9 1.0
N D:GLY246 3.6 26.4 1.0
CZ D:ARG221 3.6 24.5 1.0
CA D:GLY246 3.6 25.8 1.0
O D:HOH462 3.7 16.7 1.0
O D:GLY244 3.8 29.1 1.0
O C:HOH424 3.9 20.0 1.0
CA D:GLY213 3.9 28.5 1.0
C D:GLY213 4.0 28.8 1.0
OD1 D:ASP224 4.0 31.4 1.0
N D:LEU214 4.2 28.9 1.0
O D:GLY213 4.4 29.0 1.0
CG D:LEU214 4.4 30.9 1.0
CA D:GLY223 4.5 25.9 1.0
CD2 D:LEU214 4.7 32.2 1.0
CB D:LEU214 4.7 29.3 1.0
N D:ASP224 4.8 26.9 1.0
C D:LYS245 4.8 26.8 1.0
CA D:LEU214 4.9 28.6 1.0
NE D:ARG221 4.9 24.4 1.0
C D:GLY244 5.0 27.7 1.0
OG1 D:THR193 5.0 31.7 1.0

Chlorine binding site 4 out of 6 in 2gez

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Chlorine binding site 4 out of 6 in the Crystal Structure of Potassium-Independent Plant Asparaginase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Potassium-Independent Plant Asparaginase within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl404

b:27.6
occ:1.00
 N F:ILE321 3.3 23.2 1.0
N F:TRP322 3.3 24.1 1.0
CE3 F:TRP322 3.6 23.2 1.0
O F:TRP322 3.9 25.9 1.0
CA F:ILE321 4.1 22.8 1.0
CA F:ALA320 4.1 25.2 1.0
CB F:ALA320 4.2 25.0 1.0
C F:ILE321 4.2 23.4 1.0
CA F:TRP322 4.2 24.7 1.0
C F:ALA320 4.2 24.2 1.0
CB F:TRP322 4.3 24.3 1.0
CB F:ILE321 4.3 22.3 1.0
CZ3 F:TRP322 4.3 23.5 1.0
CD2 F:TRP322 4.4 23.8 1.0
C F:TRP322 4.5 25.9 1.0
CG F:TRP322 4.7 23.9 1.0
CG1 F:ILE321 4.9 21.2 1.0

Chlorine binding site 5 out of 6 in 2gez

Go back to Chlorine Binding Sites List in 2gez
Chlorine binding site 5 out of 6 in the Crystal Structure of Potassium-Independent Plant Asparaginase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Potassium-Independent Plant Asparaginase within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl408

b:29.2
occ:1.00
 NH1 F:ARG221 3.2 21.8 1.0
NH2 F:ARG221 3.2 22.7 1.0
CA F:GLY246 3.5 27.4 1.0
N F:GLY246 3.5 27.9 1.0
CZ F:ARG221 3.7 23.5 1.0
O F:HOH471 3.7 22.4 1.0
CD2 F:LEU214 3.8 29.9 1.0
O F:GLY244 3.8 28.6 1.0
OD1 F:ASP224 3.9 27.2 1.0
CG F:LEU214 3.9 29.4 1.0
CA F:GLY213 4.0 26.5 1.0
C F:GLY213 4.2 26.6 1.0
N F:LEU214 4.4 26.6 1.0
CA F:GLY223 4.6 26.0 1.0
C F:LYS245 4.7 28.4 1.0
O F:GLY213 4.7 27.2 1.0
CD1 F:LEU214 4.7 31.5 1.0
N F:ASP224 4.8 26.9 1.0
C F:GLY246 4.9 27.0 1.0
C F:GLY244 4.9 28.2 1.0

Chlorine binding site 6 out of 6 in 2gez

Go back to Chlorine Binding Sites List in 2gez
Chlorine binding site 6 out of 6 in the Crystal Structure of Potassium-Independent Plant Asparaginase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Potassium-Independent Plant Asparaginase within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl409

b:30.2
occ:1.00
 NH1 H:ARG221 3.0 25.0 1.0
NH2 H:ARG221 3.2 28.5 1.0
CD1 H:LEU214 3.5 29.9 1.0
CZ H:ARG221 3.5 27.3 1.0
CA H:GLY246 3.7 26.5 1.0
N H:GLY246 3.7 27.4 1.0
O H:HOH451 3.8 32.7 1.0
CA H:GLY213 3.9 25.1 1.0
C H:GLY213 3.9 25.1 1.0
O H:GLY244 4.0 27.6 1.0
OD1 H:ASP224 4.1 30.5 1.0
N H:LEU214 4.2 25.0 1.0
O H:GLY213 4.3 25.4 1.0
CB H:LEU214 4.6 26.0 1.0
CG H:LEU214 4.6 28.6 1.0
CA H:GLY223 4.6 27.9 1.0
CA H:LEU214 4.9 25.1 1.0
NE H:ARG221 4.9 25.3 1.0
C H:LYS245 4.9 28.2 1.0
N H:ASP224 5.0 28.7 1.0

Reference:

K.Michalska, G.Bujacz, M.Jaskolski. Crystal Structure of Plant Asparaginase. J.Mol.Biol. V. 360 105 2006.
ISSN: ISSN 0022-2836
PubMed: 16725155
DOI: 10.1016/J.JMB.2006.04.066
Page generated: Sat Dec 12 09:06:04 2020

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