Chlorine in PDB 2ghw: Crystal Structure of Sars Spike Protein Receptor Binding Domain in Complex with A Neutralizing Antibody, 80R

The structure of Crystal Structure of Sars Spike Protein Receptor Binding Domain in Complex with A Neutralizing Antibody, 80R, PDB code: 2ghw was solved by W.C.Hwang, Y.Lin, E.Santelli, J.Sui, L.Jaroszewski, B.Stec, M.Farzan, W.A.Marasco, R.C.Liddington, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.55 / 2.30
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	47.453, 175.902, 67.561, 90.00, 96.55, 90.00
R / Rfree (%)	24.8 / 29.5

The binding sites of Chlorine atom in the Crystal Structure of Sars Spike Protein Receptor Binding Domain in Complex with A Neutralizing Antibody, 80R (pdb code 2ghw). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of Sars Spike Protein Receptor Binding Domain in Complex with A Neutralizing Antibody, 80R, PDB code: 2ghw:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in the Crystal Structure of Sars Spike Protein Receptor Binding Domain in Complex with A Neutralizing Antibody, 80R


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Sars Spike Protein Receptor Binding Domain in Complex with A Neutralizing Antibody, 80R within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl20 b:11.4 occ:1.00 O D:HOH291 2.5 2.0 1.0 O C:HOH593 3.4 20.0 1.0 CE2 D:TYR32 3.9 15.0 1.0 CZ C:TYR491 3.9 16.6 1.0 CE1 C:TYR491 4.0 15.9 1.0 CZ D:TYR32 4.0 15.5 1.0 O D:SER31 4.0 17.2 1.0 CE2 C:TYR491 4.1 17.2 1.0 CD1 C:TYR491 4.2 15.8 1.0 CD2 C:TYR491 4.3 17.2 1.0 CA C:GLY490 4.3 16.7 1.0 OH D:TYR32 4.3 15.5 1.0 CG C:TYR491 4.3 16.8 1.0 CD2 D:TYR32 4.3 15.7 1.0 N C:GLY490 4.4 17.1 1.0 OH C:TYR491 4.4 17.7 1.0 N C:TYR491 4.4 16.4 1.0 CE1 D:TYR32 4.5 15.2 1.0 C C:GLY490 4.6 16.5 1.0 O C:GLY488 4.7 17.8 1.0 CG D:TYR32 4.8 15.6 1.0 C D:SER31 4.8 17.1 1.0 CB D:SER31 4.8 17.1 1.0 CD1 D:TYR32 4.8 14.8 1.0 C C:GLY488 4.9 17.8 1.0 CA C:GLY488 4.9 17.9 1.0 OD2 C:ASP392 4.9 23.5 1.0 O D:HOH399 4.9 5.4 1.0

Chlorine binding site 2 out of 5 in the Crystal Structure of Sars Spike Protein Receptor Binding Domain in Complex with A Neutralizing Antibody, 80R


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Sars Spike Protein Receptor Binding Domain in Complex with A Neutralizing Antibody, 80R within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl88 b:3.9 occ:1.00 O B:HOH411 2.4 8.9 1.0 O B:SER31 2.6 16.3 1.0 O A:HOH545 2.8 11.7 1.0 N A:GLY488 2.9 18.7 1.0 CA A:GLY488 3.3 18.8 1.0 C B:SER31 3.6 16.5 1.0 CA B:TYR32 3.6 16.1 1.0 CD2 A:TYR491 3.6 19.0 1.0 CD2 B:TYR32 3.9 15.2 1.0 CE2 A:TYR491 3.9 18.8 1.0 C A:GLY488 4.0 18.7 1.0 N B:TYR32 4.1 16.3 1.0 C A:THR487 4.1 18.9 1.0 O A:GLY488 4.1 18.7 1.0 CG A:TYR491 4.2 18.5 1.0 O A:HOH569 4.2 8.5 1.0 CG B:TYR32 4.2 15.4 1.0 CB A:THR487 4.3 18.4 1.0 CB B:TYR32 4.4 15.7 1.0 CA A:THR487 4.4 18.5 1.0 CE2 B:TYR32 4.4 15.1 1.0 N B:ALA33 4.5 16.8 1.0 C B:TYR32 4.6 16.2 1.0 CB A:TYR491 4.6 18.1 1.0 CZ A:TYR491 4.7 18.2 1.0 OD2 B:ASP99 4.8 19.4 1.0 CD1 A:TYR491 4.9 18.0 1.0 N A:TYR491 4.9 18.2 1.0 CD1 B:TYR32 4.9 14.7 1.0 CA B:SER31 4.9 16.3 1.0 O A:HOH539 5.0 10.8 1.0

Chlorine binding site 3 out of 5 in the Crystal Structure of Sars Spike Protein Receptor Binding Domain in Complex with A Neutralizing Antibody, 80R


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Sars Spike Protein Receptor Binding Domain in Complex with A Neutralizing Antibody, 80R within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl142 b:8.0 occ:1.00 CD A:ARG342 4.0 16.6 1.0 NE A:ARG342 4.0 16.2 1.0 CH2 A:TRP340 4.1 19.0 1.0 CZ A:ARG342 4.1 16.8 1.0 NH1 A:ARG342 4.1 17.3 1.0 CB A:ARG342 4.4 17.4 1.0 CZ3 A:TRP340 4.5 19.2 1.0 NH2 A:ARG342 4.8 17.7 1.0 CG A:ARG342 4.8 16.9 1.0 O A:PHE451 5.0 17.1 1.0 CZ2 A:TRP340 5.0 19.1 1.0

Chlorine binding site 4 out of 5 in the Crystal Structure of Sars Spike Protein Receptor Binding Domain in Complex with A Neutralizing Antibody, 80R


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Sars Spike Protein Receptor Binding Domain in Complex with A Neutralizing Antibody, 80R within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl246 b:14.6 occ:1.00 O A:HOH596 2.5 26.5 1.0 OH A:TYR491 2.9 19.2 1.0 CE1 A:TYR491 3.6 18.2 1.0 CZ A:TYR491 3.6 18.2 1.0 NE B:ARG100 3.6 23.8 1.0 O B:HOH348 3.9 25.3 1.0 CG B:ARG100 4.0 21.8 1.0 CZ B:ARG100 4.0 25.3 1.0 NH2 B:ARG100 4.0 26.4 1.0 NZ A:LYS390 4.2 22.2 1.0 CD B:ARG100 4.4 22.9 1.0 O A:HOH623 4.7 5.0 1.0 CD1 A:TYR491 4.8 18.0 1.0 CE2 A:TYR491 4.8 18.8 1.0 NH1 B:ARG100 4.8 27.0 1.0

Chlorine binding site 5 out of 5 in the Crystal Structure of Sars Spike Protein Receptor Binding Domain in Complex with A Neutralizing Antibody, 80R


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Sars Spike Protein Receptor Binding Domain in Complex with A Neutralizing Antibody, 80R within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl517 b:17.2 occ:1.00 O A:HOH567 2.5 13.0 1.0 O A:HOH595 2.6 28.7 1.0 O A:HOH563 2.7 16.4 1.0 O A:HOH577 2.8 12.9 1.0 CB A:ASN424 3.7 16.2 1.0 CB A:SER362 4.3 22.5 1.0 CG A:ASN424 4.6 15.3 1.0 O A:HOH541 4.6 10.9 1.0 N A:ASN424 4.7 16.9 1.0 OH A:TYR494 4.9 16.1 1.0 CA A:ASN424 4.9 17.0 1.0 ND2 A:ASN424 5.0 8.7 1.0

W.C.Hwang, Y.Lin, E.Santelli, J.Sui, L.Jaroszewski, B.Stec, M.Farzan, W.A.Marasco, R.C.Liddington. Structural Basis of Neutralization By A Human Anti-Severe Acute Respiratory Syndrome Spike Protein Antibody, 80R. J.Biol.Chem. V. 281 34610 2006.
ISSN: ISSN 0021-9258
PubMed: 16954221
DOI: 10.1074/JBC.M603275200