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Chlorine in PDB 2glv: Crystal Structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(Fabz) Mutant(Y100A) From Helicobacter Pylori

Protein crystallography data

The structure of Crystal Structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(Fabz) Mutant(Y100A) From Helicobacter Pylori, PDB code: 2glv was solved by L.Zhang, W.Liu, X.Shen, H.Jiang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.50
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 266.525, 76.913, 113.187, 90.00, 102.25, 90.00
R / Rfree (%) 24 / 29.3

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(Fabz) Mutant(Y100A) From Helicobacter Pylori (pdb code 2glv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 12 binding sites of Chlorine where determined in the Crystal Structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(Fabz) Mutant(Y100A) From Helicobacter Pylori, PDB code: 2glv:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 12 in 2glv

Go back to Chlorine Binding Sites List in 2glv
Chlorine binding site 1 out of 12 in the Crystal Structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(Fabz) Mutant(Y100A) From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(Fabz) Mutant(Y100A) From Helicobacter Pylori within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1010

b:72.1
occ:1.00
 N A:GLY67 2.8 40.0 1.0
O B:HOH1012 3.2 45.6 1.0
CA A:GLY67 3.3 37.9 1.0
NE2 A:HIS58 3.9 41.4 1.0
C A:PRO66 4.0 40.1 1.0
O B:HOH1013 4.0 46.6 1.0
CE1 A:HIS58 4.3 40.9 1.0
CA A:PRO66 4.3 39.7 1.0
C A:GLY67 4.5 39.0 1.0
N A:VAL68 4.6 39.6 1.0
O B:PHE101 4.8 75.1 1.0
OE1 B:GLU72 4.9 40.7 1.0
O A:PHE65 4.9 42.5 1.0
N B:PHE101 4.9 78.2 1.0
CE1 A:PHE109 5.0 57.0 1.0

Chlorine binding site 2 out of 12 in 2glv

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Chlorine binding site 2 out of 12 in the Crystal Structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(Fabz) Mutant(Y100A) From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(Fabz) Mutant(Y100A) From Helicobacter Pylori within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1001

b:56.6
occ:1.00
 O A:HOH1019 3.1 51.1 1.0
O A:HOH1011 3.4 39.9 1.0
N B:GLY67 3.5 37.4 1.0
NE2 B:HIS58 3.6 37.8 1.0
CB A:PHE101 3.7 59.7 1.0
N A:PHE101 3.8 60.0 1.0
CE1 B:HIS58 3.9 37.3 1.0
CD2 A:PHE101 4.2 61.8 1.0
CA B:PRO66 4.2 37.4 1.0
O A:VAL99 4.2 59.4 1.0
C B:PRO66 4.3 38.4 1.0
CA B:GLY67 4.3 36.3 1.0
CA A:PHE101 4.4 59.2 1.0
CG A:PHE101 4.4 60.9 1.0
C A:ALA100 4.7 60.1 1.0
CA A:ALA100 4.7 60.2 1.0
O B:PHE65 4.8 36.7 1.0
CD2 B:HIS58 4.9 35.1 1.0

Chlorine binding site 3 out of 12 in 2glv

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Chlorine binding site 3 out of 12 in the Crystal Structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(Fabz) Mutant(Y100A) From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(Fabz) Mutant(Y100A) From Helicobacter Pylori within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl1011

b:64.8
occ:1.00
 N C:GLY67 3.2 38.6 1.0
O D:HOH1013 3.4 28.0 1.0
CB D:PHE101 3.6 44.4 1.0
N D:PHE101 3.6 46.5 1.0
CA C:GLY67 3.7 36.3 1.0
CE1 C:HIS58 4.1 42.1 1.0
NE2 C:HIS58 4.2 43.2 1.0
CA D:PHE101 4.3 43.8 1.0
C C:PRO66 4.3 38.8 1.0
CD2 D:PHE101 4.3 44.8 1.0
CG D:PHE101 4.5 45.4 1.0
CA C:PRO66 4.5 39.1 1.0
C D:ALA100 4.7 48.3 1.0
CA D:ALA100 4.7 49.4 1.0
O C:PHE65 4.9 40.8 1.0

Chlorine binding site 4 out of 12 in 2glv

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Chlorine binding site 4 out of 12 in the Crystal Structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(Fabz) Mutant(Y100A) From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(Fabz) Mutant(Y100A) From Helicobacter Pylori within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl1012

b:59.0
occ:1.00
 N D:GLY67 3.1 36.7 1.0
O C:HOH1013 3.2 40.6 1.0
CB C:PHE101 3.6 59.7 1.0
NE2 D:HIS58 3.7 33.8 1.0
CA D:GLY67 3.8 34.3 1.0
CE1 D:HIS58 4.0 33.5 1.0
O C:HOH1020 4.0 39.1 1.0
CD2 C:PHE101 4.1 59.8 1.0
C D:PRO66 4.1 36.2 1.0
CA D:PRO66 4.1 35.4 1.0
N C:PHE101 4.2 60.7 1.0
CG C:PHE101 4.4 60.7 1.0
CA C:PHE101 4.6 59.1 1.0
O C:VAL99 4.7 61.6 1.0
O D:PHE65 4.7 34.0 1.0
CD2 D:HIS58 4.9 32.5 1.0
OE2 C:GLU72 5.0 35.0 1.0
C D:GLY67 5.0 34.2 1.0

Chlorine binding site 5 out of 12 in 2glv

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Chlorine binding site 5 out of 12 in the Crystal Structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(Fabz) Mutant(Y100A) From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(Fabz) Mutant(Y100A) From Helicobacter Pylori within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl1003

b:57.6
occ:1.00
 O E:HOH1005 3.3 36.7 1.0
CB E:PHE101 3.5 51.7 1.0
N F:GLY67 3.5 35.6 1.0
NE2 F:HIS58 3.7 42.3 1.0
N E:PHE101 3.8 53.2 1.0
CE1 F:HIS58 3.9 41.6 1.0
CD2 E:PHE101 4.1 50.6 1.0
CG E:PHE101 4.3 52.2 1.0
CA E:PHE101 4.3 52.1 1.0
CA F:PRO66 4.3 35.8 1.0
CA F:GLY67 4.3 33.1 1.0
O E:VAL99 4.4 53.2 1.0
C F:PRO66 4.4 36.4 1.0
O F:HOH1017 4.5 32.1 1.0
C E:ALA100 4.7 54.3 1.0
CA E:ALA100 4.7 54.0 1.0

Chlorine binding site 6 out of 12 in 2glv

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Chlorine binding site 6 out of 12 in the Crystal Structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(Fabz) Mutant(Y100A) From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(Fabz) Mutant(Y100A) From Helicobacter Pylori within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl1004

b:48.6
occ:1.00
 O F:HOH1019 3.0 35.0 1.0
O F:HOH1006 3.0 45.9 1.0
O F:HOH1007 3.2 42.8 1.0
N F:PHE101 3.4 40.0 1.0
CB F:PHE101 3.4 36.9 1.0
N E:GLY67 3.5 34.1 1.0
CD2 F:PHE101 3.9 31.9 1.0
NE2 E:HIS58 4.0 36.8 1.0
CA F:PHE101 4.1 39.2 1.0
CG F:PHE101 4.2 35.1 1.0
CA E:GLY67 4.2 31.7 1.0
CE1 E:HIS58 4.3 40.0 1.0
CA F:ALA100 4.4 42.0 1.0
C F:ALA100 4.4 41.3 1.0
CA E:PRO66 4.4 34.1 1.0
C E:PRO66 4.4 33.9 1.0
O F:VAL99 4.6 46.8 1.0
O E:PHE65 4.9 37.9 1.0
O F:PHE101 4.9 38.9 1.0
OE2 F:GLU72 5.0 31.1 1.0

Chlorine binding site 7 out of 12 in 2glv

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Chlorine binding site 7 out of 12 in the Crystal Structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(Fabz) Mutant(Y100A) From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(Fabz) Mutant(Y100A) From Helicobacter Pylori within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl1008

b:57.6
occ:1.00
 N H:GLY67 3.2 35.3 1.0
CB G:PHE101 3.3 43.0 1.0
O G:HOH1012 3.4 32.1 1.0
N G:PHE101 3.5 43.7 1.0
NE2 H:HIS58 3.8 36.7 1.0
CA H:GLY67 3.8 33.1 1.0
CD2 G:PHE101 3.9 42.2 1.0
CA G:PHE101 4.1 43.4 1.0
CG G:PHE101 4.1 42.9 1.0
CE1 H:HIS58 4.2 38.7 1.0
C H:PRO66 4.2 35.8 1.0
O H:HOH171 4.3 42.1 1.0
CA H:PRO66 4.4 36.0 1.0
C G:ALA100 4.6 44.4 1.0
O G:VAL99 4.6 45.4 1.0
CA G:ALA100 4.7 43.2 1.0
O H:PHE65 5.0 37.4 1.0

Chlorine binding site 8 out of 12 in 2glv

Go back to Chlorine Binding Sites List in 2glv
Chlorine binding site 8 out of 12 in the Crystal Structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(Fabz) Mutant(Y100A) From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(Fabz) Mutant(Y100A) From Helicobacter Pylori within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl1009

b:66.7
occ:1.00
 O H:HOH160 3.2 33.4 1.0
N G:GLY67 3.4 33.8 1.0
O H:HOH166 3.7 34.4 1.0
CB H:PHE101 3.8 68.3 1.0
NE2 G:HIS58 3.9 33.8 1.0
CE1 G:HIS58 4.0 33.3 1.0
CD2 H:PHE101 4.0 70.4 1.0
CA G:GLY67 4.1 31.5 1.0
CA G:PRO66 4.3 33.6 1.0
C G:PRO66 4.3 33.7 1.0
CG H:PHE101 4.4 70.1 1.0
N H:PHE101 4.8 68.7 1.0
O G:PHE65 4.9 37.0 1.0
CA H:PHE101 4.9 65.9 1.0
OE2 H:GLU72 5.0 35.6 1.0

Chlorine binding site 9 out of 12 in 2glv

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Chlorine binding site 9 out of 12 in the Crystal Structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(Fabz) Mutant(Y100A) From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(Fabz) Mutant(Y100A) From Helicobacter Pylori within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Cl1002

b:62.9
occ:1.00
 N I:GLY67 3.1 35.7 1.0
NE2 I:HIS58 3.7 38.6 1.0
O J:HOH171 3.8 36.4 1.0
CA I:GLY67 3.9 34.8 1.0
O J:HOH170 3.9 43.0 1.0
CA I:PRO66 3.9 36.5 1.0
C I:PRO66 4.0 36.9 1.0
CB J:PHE101 4.2 69.9 1.0
O I:PHE65 4.2 37.0 1.0
CE1 I:HIS58 4.3 37.0 1.0
O I:HOH1009 4.4 43.8 1.0
CD1 J:PHE101 4.4 74.8 1.0
CG2 I:ILE64 4.6 30.8 1.0
CG J:PHE101 4.6 73.5 1.0
N I:PRO66 4.8 35.6 1.0
C I:PHE65 4.9 36.0 1.0
CD2 I:HIS58 4.9 38.2 1.0

Chlorine binding site 10 out of 12 in 2glv

Go back to Chlorine Binding Sites List in 2glv
Chlorine binding site 10 out of 12 in the Crystal Structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(Fabz) Mutant(Y100A) From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(Fabz) Mutant(Y100A) From Helicobacter Pylori within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Cl1007

b:88.8
occ:1.00
 O I:HOH1008 2.9 35.5 1.0
O I:HOH1020 3.0 48.4 1.0
CE1 I:PHE101 3.3 75.8 1.0
CD1 I:PHE101 3.4 76.0 1.0
N J:GLY67 3.7 37.5 1.0
NE2 J:HIS58 3.9 41.3 1.0
CE1 J:HIS58 3.9 39.7 1.0
CA J:GLY67 4.3 36.1 1.0
N I:PHE101 4.4 68.7 1.0
CA I:ALA100 4.5 71.6 1.0
OE1 I:GLU72 4.6 35.7 1.0
CZ I:PHE101 4.6 76.2 1.0
CA J:PRO66 4.6 38.6 1.0
C J:PRO66 4.7 38.3 1.0
CG I:PHE101 4.8 74.3 1.0
CB I:ALA100 4.8 71.8 1.0
C I:ALA100 5.0 70.3 1.0

Reference:

L.Zhang, W.Liu, T.Hu, L.Du, C.Luo, K.Chen, X.Shen, H.Jiang. Structural Basis For Catalytic and Inhibitory Mechanisms of Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz). J.Biol.Chem. V. 283 5370 2008.
ISSN: ISSN 0021-9258
PubMed: 18093984
DOI: 10.1074/JBC.M705566200
Page generated: Sat Jul 20 07:32:47 2024

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