Chlorine in PDB 2gss: Human Glutathione S-Transferase P1-1 in Complex with Ethacrynic Acid
Enzymatic activity of Human Glutathione S-Transferase P1-1 in Complex with Ethacrynic Acid
All present enzymatic activity of Human Glutathione S-Transferase P1-1 in Complex with Ethacrynic Acid:
2.5.1.18;
Protein crystallography data
The structure of Human Glutathione S-Transferase P1-1 in Complex with Ethacrynic Acid, PDB code: 2gss
was solved by
A.J.Oakley,
J.Rossjohn,
M.W.Parker,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
15.00 /
1.90
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
77.547,
90.004,
68.883,
90.00,
97.69,
90.00
|
R / Rfree (%)
|
20.9 /
22.9
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Human Glutathione S-Transferase P1-1 in Complex with Ethacrynic Acid
(pdb code 2gss). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Human Glutathione S-Transferase P1-1 in Complex with Ethacrynic Acid, PDB code: 2gss:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 2gss
Go back to
Chlorine Binding Sites List in 2gss
Chlorine binding site 1 out
of 4 in the Human Glutathione S-Transferase P1-1 in Complex with Ethacrynic Acid
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Human Glutathione S-Transferase P1-1 in Complex with Ethacrynic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl0
b:28.2
occ:1.00
|
CL1
|
A:EAA0
|
0.0
|
28.2
|
1.0
|
C2
|
A:EAA0
|
1.7
|
31.1
|
1.0
|
C1
|
A:EAA0
|
2.7
|
31.3
|
1.0
|
C3
|
A:EAA0
|
2.7
|
33.0
|
1.0
|
O2
|
A:EAA0
|
2.8
|
30.0
|
1.0
|
OH
|
A:TYR7
|
3.1
|
16.2
|
1.0
|
CL2
|
A:EAA0
|
3.1
|
33.2
|
1.0
|
O
|
A:HOH349
|
3.4
|
20.4
|
1.0
|
O
|
A:HOH238
|
3.6
|
17.0
|
1.0
|
O
|
A:HOH291
|
3.7
|
21.5
|
1.0
|
CZ
|
A:TYR7
|
3.9
|
17.1
|
1.0
|
CG2
|
A:VAL10
|
3.9
|
14.7
|
1.0
|
C6
|
A:EAA0
|
4.0
|
32.0
|
1.0
|
OH
|
A:TYR108
|
4.0
|
18.7
|
1.0
|
C4
|
A:EAA0
|
4.0
|
34.4
|
1.0
|
CD2
|
A:PHE8
|
4.2
|
22.7
|
1.0
|
C12
|
A:EAA0
|
4.2
|
29.1
|
1.0
|
OXT
|
A:EAA0
|
4.4
|
28.1
|
1.0
|
CE1
|
A:TYR7
|
4.4
|
17.0
|
1.0
|
C5
|
A:EAA0
|
4.5
|
33.6
|
1.0
|
CE2
|
A:TYR7
|
4.6
|
15.4
|
1.0
|
CE2
|
A:PHE8
|
4.7
|
23.2
|
1.0
|
CZ
|
A:TYR108
|
4.8
|
20.9
|
1.0
|
C13
|
A:EAA0
|
4.8
|
29.4
|
1.0
|
CA
|
A:GLY12
|
5.0
|
15.0
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 2gss
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Chlorine Binding Sites List in 2gss
Chlorine binding site 2 out
of 4 in the Human Glutathione S-Transferase P1-1 in Complex with Ethacrynic Acid
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Human Glutathione S-Transferase P1-1 in Complex with Ethacrynic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl0
b:33.2
occ:1.00
|
CL2
|
A:EAA0
|
0.0
|
33.2
|
1.0
|
C3
|
A:EAA0
|
1.7
|
33.0
|
1.0
|
C2
|
A:EAA0
|
2.7
|
31.1
|
1.0
|
C4
|
A:EAA0
|
2.7
|
34.4
|
1.0
|
C7
|
A:EAA0
|
3.1
|
36.8
|
1.0
|
CL1
|
A:EAA0
|
3.1
|
28.2
|
1.0
|
O1
|
A:EAA0
|
3.3
|
36.4
|
1.0
|
CA
|
A:GLY205
|
3.7
|
22.0
|
1.0
|
CD2
|
A:PHE8
|
3.8
|
22.7
|
1.0
|
C8
|
A:EAA0
|
4.0
|
38.3
|
1.0
|
CB
|
A:PHE8
|
4.0
|
19.6
|
1.0
|
CG
|
A:PHE8
|
4.0
|
22.0
|
1.0
|
C5
|
A:EAA0
|
4.0
|
33.6
|
1.0
|
O
|
A:HOH333
|
4.0
|
20.6
|
1.0
|
C1
|
A:EAA0
|
4.0
|
31.3
|
1.0
|
CG1
|
A:VAL10
|
4.0
|
14.5
|
1.0
|
CG2
|
A:VAL10
|
4.1
|
14.7
|
1.0
|
C9
|
A:EAA0
|
4.1
|
39.4
|
1.0
|
N
|
A:GLY205
|
4.1
|
20.2
|
1.0
|
OH
|
A:TYR108
|
4.2
|
18.7
|
1.0
|
C6
|
A:EAA0
|
4.5
|
32.0
|
1.0
|
CE2
|
A:PHE8
|
4.5
|
23.2
|
1.0
|
CB
|
A:VAL10
|
4.7
|
15.7
|
1.0
|
C10
|
A:EAA0
|
4.8
|
40.5
|
1.0
|
C
|
A:GLY205
|
4.9
|
24.2
|
1.0
|
CD1
|
A:PHE8
|
4.9
|
22.4
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 2gss
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Chlorine Binding Sites List in 2gss
Chlorine binding site 3 out
of 4 in the Human Glutathione S-Transferase P1-1 in Complex with Ethacrynic Acid
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Human Glutathione S-Transferase P1-1 in Complex with Ethacrynic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl0
b:30.3
occ:1.00
|
CL1
|
B:EAA0
|
0.0
|
30.3
|
1.0
|
C2
|
B:EAA0
|
1.7
|
32.3
|
1.0
|
C1
|
B:EAA0
|
2.7
|
32.2
|
1.0
|
C3
|
B:EAA0
|
2.7
|
33.4
|
1.0
|
O2
|
B:EAA0
|
2.8
|
30.8
|
1.0
|
OH
|
B:TYR7
|
3.1
|
16.9
|
1.0
|
CL2
|
B:EAA0
|
3.1
|
33.8
|
1.0
|
O
|
B:HOH321
|
3.6
|
17.4
|
1.0
|
O
|
B:HOH345
|
3.7
|
30.8
|
1.0
|
O
|
B:HOH254
|
3.7
|
19.1
|
1.0
|
CZ
|
B:TYR7
|
3.8
|
16.7
|
1.0
|
OH
|
B:TYR108
|
3.9
|
21.4
|
1.0
|
CG2
|
B:VAL10
|
3.9
|
14.9
|
1.0
|
C6
|
B:EAA0
|
4.0
|
32.5
|
1.0
|
C4
|
B:EAA0
|
4.0
|
34.6
|
1.0
|
CD2
|
B:PHE8
|
4.2
|
23.5
|
1.0
|
C12
|
B:EAA0
|
4.2
|
29.3
|
1.0
|
CE1
|
B:TYR7
|
4.4
|
16.9
|
1.0
|
OXT
|
B:EAA0
|
4.4
|
28.5
|
1.0
|
C5
|
B:EAA0
|
4.5
|
33.8
|
1.0
|
CE2
|
B:TYR7
|
4.6
|
16.1
|
1.0
|
CE2
|
B:PHE8
|
4.7
|
23.5
|
1.0
|
CZ
|
B:TYR108
|
4.8
|
22.6
|
1.0
|
C13
|
B:EAA0
|
4.8
|
29.2
|
1.0
|
CA
|
B:GLY12
|
5.0
|
15.3
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 2gss
Go back to
Chlorine Binding Sites List in 2gss
Chlorine binding site 4 out
of 4 in the Human Glutathione S-Transferase P1-1 in Complex with Ethacrynic Acid
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Human Glutathione S-Transferase P1-1 in Complex with Ethacrynic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl0
b:33.8
occ:1.00
|
CL2
|
B:EAA0
|
0.0
|
33.8
|
1.0
|
C3
|
B:EAA0
|
1.7
|
33.4
|
1.0
|
C2
|
B:EAA0
|
2.7
|
32.3
|
1.0
|
C4
|
B:EAA0
|
2.7
|
34.6
|
1.0
|
C7
|
B:EAA0
|
3.1
|
37.0
|
1.0
|
CL1
|
B:EAA0
|
3.1
|
30.3
|
1.0
|
O1
|
B:EAA0
|
3.3
|
36.5
|
1.0
|
CA
|
B:GLY205
|
3.7
|
23.1
|
1.0
|
CD2
|
B:PHE8
|
3.8
|
23.5
|
1.0
|
O
|
B:HOH331
|
3.8
|
34.2
|
1.0
|
C8
|
B:EAA0
|
4.0
|
38.5
|
1.0
|
CB
|
B:PHE8
|
4.0
|
20.9
|
1.0
|
C5
|
B:EAA0
|
4.0
|
33.8
|
1.0
|
CG
|
B:PHE8
|
4.0
|
22.8
|
1.0
|
C1
|
B:EAA0
|
4.0
|
32.2
|
1.0
|
CG1
|
B:VAL10
|
4.0
|
15.2
|
1.0
|
CG2
|
B:VAL10
|
4.1
|
14.9
|
1.0
|
C9
|
B:EAA0
|
4.1
|
39.9
|
1.0
|
OH
|
B:TYR108
|
4.1
|
21.4
|
1.0
|
N
|
B:GLY205
|
4.1
|
21.2
|
1.0
|
C6
|
B:EAA0
|
4.5
|
32.5
|
1.0
|
CE2
|
B:PHE8
|
4.5
|
23.5
|
1.0
|
CB
|
B:VAL10
|
4.7
|
15.8
|
1.0
|
C10
|
B:EAA0
|
4.7
|
41.0
|
1.0
|
C
|
B:GLY205
|
4.9
|
24.1
|
1.0
|
CD1
|
B:PHE8
|
4.9
|
23.2
|
1.0
|
|
Reference:
A.J.Oakley,
J.Rossjohn,
M.Lo Bello,
A.M.Caccuri,
G.Federici,
M.W.Parker.
The Three-Dimensional Structure of the Human Pi Class Glutathione Transferase P1-1 in Complex with the Inhibitor Ethacrynic Acid and Its Glutathione Conjugate. Biochemistry V. 36 576 1997.
ISSN: ISSN 0006-2960
PubMed: 9012673
DOI: 10.1021/BI962316I
Page generated: Sat Jul 20 07:39:02 2024
|