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Chlorine in PDB 2h39: Crystal Structure of An Adp-Glucose Phosphorylase From Arabidopsis Thaliana with Bound Adp-Glucose

Enzymatic activity of Crystal Structure of An Adp-Glucose Phosphorylase From Arabidopsis Thaliana with Bound Adp-Glucose

All present enzymatic activity of Crystal Structure of An Adp-Glucose Phosphorylase From Arabidopsis Thaliana with Bound Adp-Glucose:
2.7.7.12;

Protein crystallography data

The structure of Crystal Structure of An Adp-Glucose Phosphorylase From Arabidopsis Thaliana with Bound Adp-Glucose, PDB code: 2h39 was solved by J.G.Mccoy, G.E.Wesenberg, G.N.Phillips Jr., E.Bitto, C.A.Bingman, Centerfor Eukaryotic Structural Genomics (Cesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.73 / 2.23
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 61.318, 95.454, 110.504, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 24.3

Other elements in 2h39:

The structure of Crystal Structure of An Adp-Glucose Phosphorylase From Arabidopsis Thaliana with Bound Adp-Glucose also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of An Adp-Glucose Phosphorylase From Arabidopsis Thaliana with Bound Adp-Glucose (pdb code 2h39). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of An Adp-Glucose Phosphorylase From Arabidopsis Thaliana with Bound Adp-Glucose, PDB code: 2h39:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 2h39

Go back to Chlorine Binding Sites List in 2h39
Chlorine binding site 1 out of 2 in the Crystal Structure of An Adp-Glucose Phosphorylase From Arabidopsis Thaliana with Bound Adp-Glucose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of An Adp-Glucose Phosphorylase From Arabidopsis Thaliana with Bound Adp-Glucose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:15.1
occ:1.00
OG1 A:THR296 2.8 9.2 1.0
N A:HIS260 3.3 18.6 1.0
ND1 A:HIS260 3.4 20.2 1.0
N A:PHE259 3.6 13.8 1.0
CB A:HIS260 3.7 20.4 1.0
CB A:PHE259 3.8 15.1 1.0
CB A:THR296 3.8 8.0 1.0
CG2 A:THR296 3.8 10.3 1.0
CD1 A:ILE156 3.9 11.7 1.0
CG A:HIS260 4.0 20.5 1.0
CB A:HIS258 4.0 19.0 1.0
CA A:PHE259 4.1 14.2 1.0
CG2 A:ILE156 4.1 14.3 1.0
CA A:HIS260 4.1 21.4 1.0
C A:PHE259 4.2 16.3 1.0
CA A:HIS258 4.3 16.3 1.0
C A:HIS258 4.3 13.1 1.0
CE1 A:HIS260 4.5 21.9 1.0
CD2 A:PHE259 4.5 14.2 1.0
CG1 A:ILE156 4.6 14.3 1.0
CG A:PHE259 4.7 9.5 1.0
CG A:HIS258 4.8 25.7 1.0
CD2 A:HIS258 4.9 24.9 1.0
CB A:ILE156 4.9 13.4 1.0

Chlorine binding site 2 out of 2 in 2h39

Go back to Chlorine Binding Sites List in 2h39
Chlorine binding site 2 out of 2 in the Crystal Structure of An Adp-Glucose Phosphorylase From Arabidopsis Thaliana with Bound Adp-Glucose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of An Adp-Glucose Phosphorylase From Arabidopsis Thaliana with Bound Adp-Glucose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl401

b:13.3
occ:1.00
OG1 B:THR296 3.0 15.0 1.0
O B:HOH611 3.0 29.1 1.0
N B:HIS260 3.3 18.0 1.0
ND1 B:HIS260 3.4 19.2 1.0
N B:PHE259 3.6 13.3 1.0
CG2 B:THR296 3.6 7.2 1.0
CB B:HIS260 3.7 16.7 1.0
CB B:THR296 3.8 10.6 1.0
CB B:PHE259 3.9 13.2 1.0
CG B:HIS260 3.9 17.3 1.0
CG2 B:ILE156 4.0 6.9 1.0
CB B:HIS258 4.1 12.4 1.0
CA B:HIS260 4.1 17.7 1.0
CD1 B:ILE156 4.1 14.7 1.0
CA B:PHE259 4.1 14.0 1.0
C B:PHE259 4.2 16.5 1.0
CA B:HIS258 4.2 12.0 1.0
C B:HIS258 4.3 13.2 1.0
CE1 B:HIS260 4.5 16.5 1.0
ND1 B:HIS258 4.7 13.6 1.0
CD2 B:PHE259 4.7 17.2 1.0
CG B:PHE259 4.8 15.6 1.0
CG1 B:ILE156 4.9 14.0 1.0
CG B:HIS258 4.9 16.2 1.0
CB B:ILE156 4.9 13.3 1.0
N B:SER297 5.0 12.5 1.0
O B:SER297 5.0 10.0 1.0

Reference:

J.G.Mccoy, G.E.Wesenberg, G.N.Phillips Jr., E.Bitto, C.A.Bingman. Crystal Structure of An Adp-Glucose Phosphorylase From Arabidopsis Thaliana with Bound Adp-Glucose To Be Published.
Page generated: Thu Jul 10 22:29:48 2025

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