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Chlorine in PDB 2hba: Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9) K12M

Protein crystallography data

The structure of Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9) K12M, PDB code: 2hba was solved by J.-H.Cho, E.Y.Kim, H.Schindelin, D.P.Raleigh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.25
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 52.614, 74.416, 50.755, 90.00, 90.00, 90.00
R / Rfree (%) 14.4 / 16.4

Other elements in 2hba:

The structure of Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9) K12M also contains other interesting chemical elements:

Zinc (Zn) 8 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9) K12M (pdb code 2hba). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 10 binding sites of Chlorine where determined in the Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9) K12M, PDB code: 2hba:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 10 in 2hba

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Chlorine binding site 1 out of 10 in the Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9) K12M


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9) K12M within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:37.6
occ:1.00
 ZN A:ZN101 1.9 18.9 1.0
OD1 A:ASP23 2.7 19.0 1.0
O A:HOH241 2.8 28.1 1.0
N A:MET1 3.1 14.6 1.0
CG A:ASP23 3.4 20.2 1.0
OD2 A:ASP23 3.8 22.9 1.0
O A:VAL21 3.8 13.7 1.0
O A:HOH210 4.0 14.2 1.0
N A:ASP23 4.1 14.7 1.0
O A:HOH213 4.4 19.0 1.0
CA A:MET1 4.5 14.4 1.0
CB A:ASP23 4.5 17.0 1.0
CA A:ALA22 4.7 12.4 1.0
C A:ALA22 4.7 13.4 1.0
CA A:ASP23 4.8 14.9 1.0
C A:VAL21 4.8 11.6 1.0
CB A:MET1 4.9 18.5 1.0

Chlorine binding site 2 out of 10 in 2hba

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Chlorine binding site 2 out of 10 in the Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9) K12M


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9) K12M within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:17.9
occ:1.00
 CL A:CL205 2.1 23.8 1.0
ZN A:ZN102 2.2 20.2 1.0
OD2 A:ASP8 3.1 19.4 1.0
O A:HOH209 3.4 30.0 1.0
O A:HOH234 3.5 22.6 1.0
CG A:ASP8 4.3 14.9 1.0
OD1 A:ASP8 4.8 16.7 1.0

Chlorine binding site 3 out of 10 in 2hba

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Chlorine binding site 3 out of 10 in the Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9) K12M


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9) K12M within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:23.8
occ:1.00
 ZN A:ZN102 1.6 20.2 1.0
CL A:CL204 2.1 17.9 1.0
OD2 A:ASP8 2.1 19.4 1.0
O A:HOH234 2.2 22.6 1.0
O A:HOH209 2.5 30.0 1.0
CG A:ASP8 2.8 14.9 1.0
OD1 A:ASP8 2.9 16.7 1.0
CB A:ASP8 4.2 13.4 1.0
CB A:LYS14 4.7 15.4 1.0
CG A:LYS14 4.9 20.6 1.0

Chlorine binding site 4 out of 10 in 2hba

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Chlorine binding site 4 out of 10 in the Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9) K12M


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9) K12M within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl208

b:23.7
occ:1.00
 ZN A:ZN106 2.2 25.7 1.0
O A:HOH228 3.2 30.5 1.0
O A:HOH233 3.5 26.5 1.0
N A:TYR25 3.5 14.8 1.0
O A:HOH217 3.6 18.6 1.0
CB A:ALA22 3.7 14.5 1.0
O A:HOH218 3.8 26.4 1.0
CA A:GLY24 3.9 16.2 1.0
C A:GLY24 4.0 15.9 1.0
N A:GLY24 4.1 15.6 1.0
CB A:TYR25 4.3 14.1 1.0
CA A:TYR25 4.4 14.1 1.0
O A:GLY24 4.9 17.2 1.0
CA A:ALA22 4.9 12.4 1.0
C A:ALA22 5.0 13.4 1.0

Chlorine binding site 5 out of 10 in 2hba

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Chlorine binding site 5 out of 10 in the Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9) K12M


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9) K12M within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl201

b:12.3
occ:1.00
 ZN B:ZN105 2.2 11.6 1.0
NZ B:LYS19 3.3 13.5 1.0
OE2 B:GLU17 3.5 11.0 1.0
CE B:LYS19 3.6 12.8 1.0
CL B:CL202 3.7 12.8 1.0
OE1 B:GLU17 3.8 10.4 1.0
CD B:GLU17 3.9 10.0 1.0
O B:HOH325 4.3 28.5 1.0
O B:HOH330 5.0 40.7 1.0

Chlorine binding site 6 out of 10 in 2hba

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Chlorine binding site 6 out of 10 in the Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9) K12M


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9) K12M within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl202

b:12.8
occ:1.00
 ZN B:ZN105 2.3 11.6 1.0
O B:HOH330 3.2 40.7 1.0
OE1 B:GLU17 3.4 10.4 1.0
NZ B:LYS14 3.5 14.8 0.2
CA B:GLY13 3.6 10.3 1.0
CL B:CL201 3.7 12.3 1.0
C B:GLY13 3.7 9.8 1.0
O B:HOH325 3.8 28.5 1.0
N B:GLY13 3.8 9.8 1.0
OE2 B:GLU17 3.8 11.0 1.0
NZ B:LYS19 3.8 13.5 1.0
CG B:LYS14 3.9 16.9 1.0
CE B:LYS14 4.0 19.0 0.8
O B:HOH316 4.0 27.7 1.0
N B:LYS14 4.0 10.4 1.0
O B:HOH312 4.0 22.5 1.0
CD B:GLU17 4.0 10.0 1.0
O B:GLY13 4.1 12.0 1.0
CD B:LYS14 4.2 18.6 0.8
CD B:LYS14 4.2 15.9 0.2
C B:MET12 4.3 10.3 1.0
CE B:LYS14 4.4 15.4 0.2
O B:MET12 4.5 10.5 1.0
NZ B:LYS14 4.7 23.3 0.8
CB B:LYS14 4.7 13.2 1.0
N B:MET12 4.8 12.8 1.0
CE B:LYS19 4.8 12.8 1.0
CA B:LYS14 4.9 11.8 1.0

Chlorine binding site 7 out of 10 in 2hba

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Chlorine binding site 7 out of 10 in the Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9) K12M


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9) K12M within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl206

b:23.6
occ:1.00
 ZN B:ZN104 2.2 24.5 1.0
OD2 B:ASP8 3.2 17.7 1.0
O B:HOH309 3.7 21.0 1.0
CG B:ASP8 4.4 14.4 1.0
OD1 B:ASP8 4.9 15.1 1.0

Chlorine binding site 8 out of 10 in 2hba

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Chlorine binding site 8 out of 10 in the Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9) K12M


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9) K12M within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl207

b:20.9
occ:1.00
 ZN B:ZN107 2.1 22.6 1.0
O B:HOH308 3.4 21.4 1.0
N1 B:IMD301 3.4 18.8 1.0
CL B:CL209 3.4 33.0 1.0
N B:TYR25 3.4 13.4 1.0
CB B:ALA22 3.6 13.7 1.0
C5 B:IMD301 3.6 20.0 1.0
CB B:TYR25 3.9 12.3 1.0
CA B:GLY24 4.1 16.1 1.0
C B:GLY24 4.1 14.6 1.0
CA B:TYR25 4.2 13.8 1.0
N B:GLY24 4.2 14.7 1.0
C2 B:IMD301 4.7 20.7 1.0
CA B:ALA22 4.8 12.2 1.0
C B:ALA22 4.9 12.7 1.0
O B:ALA22 5.0 12.4 1.0

Chlorine binding site 9 out of 10 in 2hba

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Chlorine binding site 9 out of 10 in the Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9) K12M


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9) K12M within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl209

b:33.0
occ:1.00
 ZN B:ZN107 2.1 22.6 1.0
CL B:CL207 3.4 20.9 1.0
N1 B:IMD301 3.5 18.8 1.0
C2 B:IMD301 4.0 20.7 1.0
O B:HOH308 4.1 21.4 1.0
CA B:GLY24 4.6 16.1 1.0
C5 B:IMD301 4.7 20.0 1.0

Chlorine binding site 10 out of 10 in 2hba

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Chlorine binding site 10 out of 10 in the Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9) K12M


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9) K12M within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl210

b:22.3
occ:1.00
 ZN B:ZN103 2.2 18.5 1.0
OD1 B:ASP23 3.4 15.9 1.0
O B:HOH310 3.4 21.0 1.0
N B:MET1 3.5 13.2 1.0
OD2 B:ASP23 3.8 21.6 1.0
CG B:ASP23 3.9 15.8 1.0
O B:HOH304 4.5 13.7 1.0
O B:VAL21 4.8 12.3 1.0
CA B:MET1 4.8 15.2 1.0

Reference:

J.H.Cho, W.Meng, S.Sato, E.Y.Kim, H.Schindelin, D.P.Raleigh. Energetically Significant Networks of Coupled Interactions Within An Unfolded Protein. Proc.Natl.Acad.Sci.Usa V. 111 12079 2014.
ISSN: ISSN 0027-8424
PubMed: 25099351
DOI: 10.1073/PNAS.1402054111
Page generated: Sat Jul 20 07:46:49 2024

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