Chlorine in PDB 2hek: Crystal Structure of O67745, A Hypothetical Protein From Aquifex Aeolicus at 2.0 A Resolution.
Protein crystallography data
The structure of Crystal Structure of O67745, A Hypothetical Protein From Aquifex Aeolicus at 2.0 A Resolution., PDB code: 2hek
was solved by
V.Oganesyan,
J.Jancarik,
P.D.Adams,
R.Kim,
S.H.Kim,
Berkeley Structuralgenomics Center (Bsgc),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
12.00 /
2.00
|
Space group
|
C 2 2 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
107.687,
144.413,
144.677,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
17.5 /
22
|
Other elements in 2hek:
The structure of Crystal Structure of O67745, A Hypothetical Protein From Aquifex Aeolicus at 2.0 A Resolution. also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of O67745, A Hypothetical Protein From Aquifex Aeolicus at 2.0 A Resolution.
(pdb code 2hek). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
Crystal Structure of O67745, A Hypothetical Protein From Aquifex Aeolicus at 2.0 A Resolution., PDB code: 2hek:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 2hek
Go back to
Chlorine Binding Sites List in 2hek
Chlorine binding site 1 out
of 5 in the Crystal Structure of O67745, A Hypothetical Protein From Aquifex Aeolicus at 2.0 A Resolution.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of O67745, A Hypothetical Protein From Aquifex Aeolicus at 2.0 A Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl604
b:39.1
occ:1.00
|
OE2
|
A:GLU75
|
2.8
|
47.8
|
1.0
|
OH
|
A:TYR59
|
2.9
|
32.0
|
1.0
|
O
|
A:HOH730
|
3.3
|
76.9
|
1.0
|
N
|
A:GLY19
|
3.3
|
32.7
|
1.0
|
N
|
A:GLY16
|
3.4
|
36.1
|
1.0
|
CA
|
A:GLY16
|
3.5
|
37.0
|
1.0
|
C
|
A:GLY16
|
3.6
|
39.5
|
1.0
|
CD
|
A:GLU75
|
3.6
|
46.4
|
1.0
|
OE1
|
A:GLU75
|
3.7
|
46.5
|
1.0
|
O
|
A:GLY16
|
3.7
|
39.5
|
1.0
|
O
|
A:HOH692
|
3.7
|
55.2
|
1.0
|
CZ
|
A:TYR59
|
3.8
|
31.0
|
1.0
|
CA
|
A:GLY19
|
3.9
|
31.4
|
1.0
|
CE2
|
A:TYR59
|
3.9
|
29.7
|
1.0
|
N
|
A:ALA18
|
4.1
|
33.2
|
1.0
|
N
|
A:GLU17
|
4.3
|
39.4
|
1.0
|
C
|
A:ALA18
|
4.3
|
32.9
|
1.0
|
CB
|
A:ALA18
|
4.4
|
32.5
|
1.0
|
CD2
|
A:LEU79
|
4.4
|
34.4
|
1.0
|
CA
|
A:ALA18
|
4.5
|
33.9
|
1.0
|
CG1
|
A:VAL15
|
4.5
|
36.5
|
1.0
|
C
|
A:VAL15
|
4.6
|
35.4
|
1.0
|
NZ
|
A:LYS78
|
4.8
|
37.3
|
1.0
|
C
|
A:GLU17
|
4.9
|
34.8
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 2hek
Go back to
Chlorine Binding Sites List in 2hek
Chlorine binding site 2 out
of 5 in the Crystal Structure of O67745, A Hypothetical Protein From Aquifex Aeolicus at 2.0 A Resolution.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of O67745, A Hypothetical Protein From Aquifex Aeolicus at 2.0 A Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl606
b:40.5
occ:1.00
|
O
|
A:HOH728
|
3.0
|
47.1
|
1.0
|
N
|
A:LEU39
|
3.2
|
29.4
|
1.0
|
O
|
A:HOH767
|
3.2
|
57.9
|
1.0
|
N
|
A:SER92
|
3.5
|
43.0
|
1.0
|
OG
|
A:SER92
|
3.6
|
51.2
|
1.0
|
CD2
|
A:PHE91
|
3.6
|
33.0
|
1.0
|
CB
|
A:PHE91
|
3.7
|
38.5
|
1.0
|
CA
|
A:GLY38
|
3.7
|
28.2
|
1.0
|
CB
|
A:SER92
|
3.8
|
50.0
|
1.0
|
CB
|
A:LEU39
|
3.9
|
29.3
|
1.0
|
CG
|
A:PHE91
|
4.0
|
36.0
|
1.0
|
CG
|
A:LEU39
|
4.0
|
32.0
|
1.0
|
C
|
A:GLY38
|
4.0
|
28.6
|
1.0
|
O
|
A:HOH704
|
4.1
|
46.7
|
1.0
|
CA
|
A:LEU39
|
4.1
|
27.3
|
1.0
|
CA
|
A:SER92
|
4.2
|
48.4
|
1.0
|
CA
|
A:PHE91
|
4.2
|
39.4
|
1.0
|
O
|
A:LEU37
|
4.2
|
27.4
|
1.0
|
CD1
|
A:LEU39
|
4.3
|
35.2
|
1.0
|
C
|
A:PHE91
|
4.3
|
43.5
|
1.0
|
CB
|
A:SER230
|
4.4
|
38.2
|
1.0
|
OG
|
A:SER230
|
4.4
|
41.2
|
1.0
|
CD2
|
A:LEU233
|
4.5
|
42.7
|
1.0
|
CA
|
A:SER230
|
4.6
|
34.0
|
1.0
|
CE2
|
A:PHE91
|
4.7
|
34.7
|
1.0
|
N
|
A:GLY38
|
4.7
|
26.7
|
1.0
|
O
|
A:SER92
|
4.8
|
48.8
|
1.0
|
C
|
A:LEU37
|
4.8
|
26.3
|
1.0
|
C
|
A:LEU39
|
4.9
|
25.2
|
1.0
|
C
|
A:SER92
|
5.0
|
49.8
|
1.0
|
N
|
A:ALA40
|
5.0
|
23.9
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 2hek
Go back to
Chlorine Binding Sites List in 2hek
Chlorine binding site 3 out
of 5 in the Crystal Structure of O67745, A Hypothetical Protein From Aquifex Aeolicus at 2.0 A Resolution.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of O67745, A Hypothetical Protein From Aquifex Aeolicus at 2.0 A Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl605
b:36.5
occ:1.00
|
O
|
B:HOH654
|
3.1
|
38.9
|
1.0
|
N
|
B:LEU39
|
3.2
|
29.9
|
1.0
|
N
|
B:SER92
|
3.5
|
38.6
|
1.0
|
CB
|
B:SER92
|
3.7
|
48.7
|
1.0
|
CA
|
B:GLY38
|
3.8
|
26.4
|
1.0
|
CB
|
B:LEU39
|
3.9
|
28.7
|
1.0
|
OG
|
B:SER92
|
3.9
|
52.9
|
1.0
|
CG
|
B:LEU39
|
3.9
|
30.3
|
1.0
|
C
|
B:GLY38
|
4.0
|
28.9
|
1.0
|
CB
|
B:PHE91
|
4.0
|
35.5
|
1.0
|
CA
|
B:LEU39
|
4.1
|
29.8
|
1.0
|
CD2
|
B:PHE91
|
4.1
|
34.7
|
1.0
|
O
|
B:HOH661
|
4.1
|
44.1
|
1.0
|
O
|
B:LEU37
|
4.2
|
24.8
|
1.0
|
CA
|
B:SER92
|
4.2
|
46.2
|
1.0
|
CA
|
B:PHE91
|
4.3
|
36.8
|
1.0
|
CB
|
B:SER230
|
4.3
|
37.4
|
1.0
|
CD1
|
B:LEU39
|
4.4
|
27.5
|
1.0
|
OG
|
B:SER230
|
4.4
|
39.2
|
1.0
|
CA
|
B:SER230
|
4.4
|
32.3
|
1.0
|
C
|
B:PHE91
|
4.5
|
41.5
|
1.0
|
CG
|
B:PHE91
|
4.5
|
34.7
|
1.0
|
CG
|
B:LEU233
|
4.8
|
35.0
|
1.0
|
O
|
B:SER92
|
4.8
|
44.6
|
1.0
|
N
|
B:GLY38
|
4.8
|
25.2
|
1.0
|
C
|
B:LEU37
|
4.9
|
25.3
|
1.0
|
C
|
B:LEU39
|
4.9
|
27.8
|
1.0
|
N
|
B:ALA40
|
5.0
|
27.3
|
1.0
|
CB
|
B:LEU233
|
5.0
|
33.2
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 2hek
Go back to
Chlorine Binding Sites List in 2hek
Chlorine binding site 4 out
of 5 in the Crystal Structure of O67745, A Hypothetical Protein From Aquifex Aeolicus at 2.0 A Resolution.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of O67745, A Hypothetical Protein From Aquifex Aeolicus at 2.0 A Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl607
b:50.5
occ:1.00
|
OH
|
B:TYR165
|
2.8
|
32.5
|
1.0
|
NE
|
B:ARG213
|
3.0
|
50.9
|
1.0
|
OH
|
B:TYR217
|
3.2
|
38.1
|
1.0
|
NH1
|
B:ARG162
|
3.5
|
58.7
|
1.0
|
CE1
|
B:TYR217
|
3.6
|
32.8
|
1.0
|
CG
|
B:ARG162
|
3.7
|
46.1
|
1.0
|
CZ
|
B:TYR165
|
3.8
|
29.4
|
1.0
|
CD
|
B:ARG213
|
3.8
|
41.1
|
1.0
|
CD
|
B:ARG162
|
3.8
|
52.4
|
1.0
|
CE1
|
B:TYR165
|
3.8
|
27.9
|
1.0
|
CZ
|
B:ARG213
|
3.9
|
57.3
|
1.0
|
NH2
|
B:ARG213
|
3.9
|
59.5
|
1.0
|
CZ
|
B:TYR217
|
3.9
|
34.7
|
1.0
|
CG
|
B:ARG213
|
4.2
|
37.4
|
1.0
|
CZ
|
B:ARG162
|
4.2
|
56.9
|
1.0
|
NE
|
B:ARG162
|
4.3
|
55.8
|
1.0
|
CD2
|
B:LEU166
|
4.5
|
25.1
|
1.0
|
CB
|
B:ARG162
|
4.8
|
34.1
|
1.0
|
O
|
B:HOH714
|
4.9
|
54.3
|
1.0
|
CD1
|
B:TYR217
|
4.9
|
30.6
|
1.0
|
CG
|
B:LEU166
|
4.9
|
26.5
|
1.0
|
CD1
|
B:LEU166
|
5.0
|
27.6
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 2hek
Go back to
Chlorine Binding Sites List in 2hek
Chlorine binding site 5 out
of 5 in the Crystal Structure of O67745, A Hypothetical Protein From Aquifex Aeolicus at 2.0 A Resolution.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of O67745, A Hypothetical Protein From Aquifex Aeolicus at 2.0 A Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl608
b:66.0
occ:1.00
|
NH1
|
B:ARG64
|
2.7
|
67.2
|
1.0
|
OH
|
B:TYR182
|
3.0
|
45.4
|
1.0
|
NE2
|
B:HIS60
|
3.1
|
30.0
|
1.0
|
O
|
B:HOH699
|
3.4
|
58.8
|
1.0
|
CD2
|
B:TYR10
|
3.9
|
27.1
|
1.0
|
CZ
|
B:TYR182
|
3.9
|
40.8
|
1.0
|
CE1
|
B:HIS60
|
4.0
|
31.8
|
1.0
|
CE1
|
B:TYR182
|
4.0
|
39.8
|
1.0
|
CZ
|
B:ARG64
|
4.0
|
65.1
|
1.0
|
CD2
|
B:HIS60
|
4.1
|
28.3
|
1.0
|
CB
|
B:TYR10
|
4.2
|
25.5
|
1.0
|
O
|
B:TYR10
|
4.3
|
38.1
|
1.0
|
CG
|
B:TYR10
|
4.4
|
23.6
|
1.0
|
CA
|
B:TYR10
|
4.6
|
28.2
|
1.0
|
CD
|
B:ARG64
|
4.8
|
58.7
|
1.0
|
OD2
|
B:ASP183
|
4.8
|
62.3
|
1.0
|
NH2
|
B:ARG64
|
4.8
|
65.5
|
1.0
|
NE
|
B:ARG64
|
4.9
|
63.4
|
1.0
|
CE2
|
B:TYR10
|
4.9
|
29.0
|
1.0
|
C
|
B:TYR10
|
4.9
|
33.1
|
1.0
|
CG
|
B:ARG64
|
5.0
|
49.0
|
1.0
|
|
Reference:
V.Oganesyan,
P.D.Adams,
J.Jancarik,
R.Kim,
S.H.Kim.
Structure of O67745_AQUAE, A Hypothetical Protein From Aquifex Aeolicus. Acta Crystallogr.,Sect.F V. 63 369 2007.
ISSN: ESSN 1744-3091
PubMed: 17565173
DOI: 10.1107/S1744309107018945
Page generated: Sat Jul 20 07:48:31 2024
|