Chlorine in PDB 2hiy: The Structure of Conserved Bacterial Protein SP0830 From Streptococcus Pneumoniae. (Casp Target)
Protein crystallography data
The structure of The Structure of Conserved Bacterial Protein SP0830 From Streptococcus Pneumoniae. (Casp Target), PDB code: 2hiy
was solved by
M.E.Cuff,
M.Zhou,
J.Abdullah,
A.Joachimiak,
Midwest Center For Structuralgenomics (Mcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.28 /
1.40
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
63.252,
108.845,
65.527,
90.00,
97.15,
90.00
|
R / Rfree (%)
|
16.3 /
19.4
|
Other elements in 2hiy:
The structure of The Structure of Conserved Bacterial Protein SP0830 From Streptococcus Pneumoniae. (Casp Target) also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the The Structure of Conserved Bacterial Protein SP0830 From Streptococcus Pneumoniae. (Casp Target)
(pdb code 2hiy). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
The Structure of Conserved Bacterial Protein SP0830 From Streptococcus Pneumoniae. (Casp Target), PDB code: 2hiy:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 2hiy
Go back to
Chlorine Binding Sites List in 2hiy
Chlorine binding site 1 out
of 4 in the The Structure of Conserved Bacterial Protein SP0830 From Streptococcus Pneumoniae. (Casp Target)
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of The Structure of Conserved Bacterial Protein SP0830 From Streptococcus Pneumoniae. (Casp Target) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl7005
b:21.7
occ:1.00
|
O
|
A:HOH8287
|
2.9
|
39.1
|
1.0
|
O
|
A:HOH8131
|
2.9
|
32.7
|
1.0
|
O
|
A:HOH8005
|
3.1
|
12.1
|
1.0
|
CB
|
A:LYS124
|
3.9
|
12.5
|
1.0
|
CE
|
A:LYS147
|
4.0
|
26.4
|
1.0
|
CB
|
A:LYS147
|
4.1
|
13.8
|
1.0
|
CD
|
A:LYS147
|
4.2
|
22.7
|
1.0
|
CB
|
A:ASP125
|
4.3
|
11.3
|
1.0
|
N
|
A:ASP125
|
4.4
|
11.9
|
1.0
|
CB
|
A:SER144
|
4.4
|
13.5
|
1.0
|
CG
|
A:LYS124
|
4.5
|
15.9
|
1.0
|
CD
|
A:LYS124
|
4.6
|
17.6
|
1.0
|
CG
|
A:LYS147
|
4.8
|
15.8
|
1.0
|
O
|
A:HOH8411
|
4.9
|
47.6
|
1.0
|
CA
|
A:LYS124
|
4.9
|
12.2
|
1.0
|
O
|
A:SER144
|
4.9
|
13.5
|
1.0
|
C
|
A:LYS124
|
5.0
|
11.8
|
1.0
|
CA
|
A:ASP125
|
5.0
|
12.2
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 2hiy
Go back to
Chlorine Binding Sites List in 2hiy
Chlorine binding site 2 out
of 4 in the The Structure of Conserved Bacterial Protein SP0830 From Streptococcus Pneumoniae. (Casp Target)
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of The Structure of Conserved Bacterial Protein SP0830 From Streptococcus Pneumoniae. (Casp Target) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl7006
b:25.9
occ:1.00
|
OG1
|
A:THR117
|
3.1
|
13.0
|
1.0
|
CD2
|
A:PHE159
|
3.6
|
14.7
|
1.0
|
CG
|
A:GLN113
|
3.8
|
12.8
|
1.0
|
CB
|
A:THR117
|
3.8
|
12.2
|
1.0
|
CD
|
A:PRO158
|
4.0
|
15.5
|
1.0
|
CG
|
A:PRO158
|
4.1
|
17.9
|
1.0
|
O
|
A:GLN113
|
4.1
|
11.8
|
1.0
|
CB
|
A:PRO158
|
4.1
|
15.6
|
1.0
|
CG2
|
A:THR117
|
4.2
|
13.2
|
1.0
|
CB
|
A:PHE159
|
4.3
|
15.8
|
1.0
|
NE2
|
A:GLN113
|
4.3
|
17.0
|
1.0
|
N
|
A:PHE159
|
4.4
|
13.6
|
1.0
|
C
|
A:GLN113
|
4.4
|
11.6
|
1.0
|
CG
|
A:PHE159
|
4.4
|
14.1
|
1.0
|
CA
|
A:VAL114
|
4.5
|
12.3
|
1.0
|
CE2
|
A:PHE159
|
4.5
|
14.2
|
1.0
|
N
|
A:VAL114
|
4.5
|
11.7
|
1.0
|
CD
|
A:GLN113
|
4.6
|
13.9
|
1.0
|
O
|
A:HOH8172
|
4.7
|
24.9
|
1.0
|
N
|
A:PRO158
|
4.7
|
14.0
|
1.0
|
CB
|
A:GLN113
|
4.8
|
11.8
|
1.0
|
CA
|
A:PRO158
|
4.9
|
14.8
|
1.0
|
CG2
|
A:VAL114
|
4.9
|
14.8
|
1.0
|
CA
|
A:PHE159
|
4.9
|
14.3
|
1.0
|
C
|
A:PRO158
|
4.9
|
14.5
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 2hiy
Go back to
Chlorine Binding Sites List in 2hiy
Chlorine binding site 3 out
of 4 in the The Structure of Conserved Bacterial Protein SP0830 From Streptococcus Pneumoniae. (Casp Target)
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of The Structure of Conserved Bacterial Protein SP0830 From Streptococcus Pneumoniae. (Casp Target) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl7004
b:16.3
occ:1.00
|
O
|
B:HOH7072
|
3.0
|
21.0
|
1.0
|
OG1
|
B:THR170
|
3.1
|
16.7
|
1.0
|
O
|
B:HOH7087
|
3.1
|
24.9
|
1.0
|
O
|
B:HOH7248
|
3.2
|
42.7
|
1.0
|
N
|
B:ASN167
|
3.3
|
13.7
|
1.0
|
CB
|
B:THR170
|
3.6
|
16.0
|
1.0
|
CD
|
B:ARG166
|
3.7
|
16.0
|
1.0
|
CA
|
B:ARG166
|
3.7
|
14.7
|
1.0
|
CG
|
B:ASN167
|
3.7
|
15.4
|
1.0
|
OD1
|
B:ASN167
|
3.8
|
16.4
|
1.0
|
ND2
|
B:ASN167
|
3.9
|
19.1
|
1.0
|
C
|
B:ARG166
|
4.0
|
15.4
|
1.0
|
CB
|
B:ARG166
|
4.1
|
14.8
|
1.0
|
CG2
|
B:THR170
|
4.1
|
16.4
|
1.0
|
CB
|
B:ASN167
|
4.3
|
15.4
|
1.0
|
CA
|
B:ASN167
|
4.3
|
13.8
|
1.0
|
CG
|
B:ARG166
|
4.5
|
15.6
|
1.0
|
O
|
B:ILE165
|
4.6
|
14.4
|
1.0
|
O
|
B:HOH7143
|
4.7
|
31.6
|
1.0
|
NE
|
B:ARG166
|
4.8
|
16.2
|
1.0
|
CD1
|
B:ILE40
|
4.8
|
19.0
|
1.0
|
O
|
B:HOH7058
|
4.9
|
22.0
|
1.0
|
O
|
B:ASN167
|
4.9
|
14.5
|
1.0
|
O
|
B:HOH7100
|
4.9
|
22.4
|
1.0
|
CA
|
B:THR170
|
4.9
|
14.8
|
1.0
|
N
|
B:ARG166
|
4.9
|
14.0
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 2hiy
Go back to
Chlorine Binding Sites List in 2hiy
Chlorine binding site 4 out
of 4 in the The Structure of Conserved Bacterial Protein SP0830 From Streptococcus Pneumoniae. (Casp Target)
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of The Structure of Conserved Bacterial Protein SP0830 From Streptococcus Pneumoniae. (Casp Target) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl7003
b:15.3
occ:1.00
|
OG1
|
C:THR170
|
3.0
|
15.0
|
1.0
|
O
|
C:HOH7090
|
3.0
|
22.0
|
1.0
|
O
|
C:HOH7124
|
3.1
|
30.6
|
1.0
|
O
|
C:HOH7382
|
3.2
|
32.4
|
1.0
|
N
|
C:ASN167
|
3.3
|
12.6
|
1.0
|
CB
|
C:THR170
|
3.6
|
14.5
|
1.0
|
CG
|
C:ASN167
|
3.7
|
14.4
|
1.0
|
OD1
|
C:ASN167
|
3.7
|
16.3
|
1.0
|
CA
|
C:ARG166
|
3.7
|
14.2
|
1.0
|
CD
|
C:ARG166
|
3.8
|
14.6
|
1.0
|
ND2
|
C:ASN167
|
3.8
|
17.2
|
1.0
|
C
|
C:ARG166
|
4.0
|
14.5
|
1.0
|
CB
|
C:ARG166
|
4.1
|
14.3
|
1.0
|
CG2
|
C:THR170
|
4.1
|
13.5
|
1.0
|
CB
|
C:ASN167
|
4.2
|
13.7
|
1.0
|
CA
|
C:ASN167
|
4.3
|
13.3
|
1.0
|
CG
|
C:ARG166
|
4.6
|
15.4
|
1.0
|
O
|
C:HOH7114
|
4.6
|
27.2
|
1.0
|
CD1
|
C:ILE40
|
4.7
|
17.4
|
1.0
|
O
|
C:ILE165
|
4.8
|
14.4
|
1.0
|
O
|
C:HOH7189
|
4.9
|
31.2
|
1.0
|
O
|
C:HOH7150
|
4.9
|
28.9
|
1.0
|
NE
|
C:ARG166
|
4.9
|
14.3
|
1.0
|
O
|
C:ASN167
|
4.9
|
14.0
|
1.0
|
CA
|
C:THR170
|
4.9
|
14.0
|
1.0
|
|
Reference:
M.E.Cuff,
M.Zhou,
J.Abdullah,
A.Joachimiak.
The Structure of Conserved Bacterial Protein SP0830 From Streptococcus Pneumoniae. (Casp Target) To Be Published.
Page generated: Sat Jul 20 07:50:56 2024
|