Chlorine in PDB 2hvf: Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA

The structure of Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA, PDB code: 2hvf was solved by B.Anil, E.Y.Kim, J.H.Cho, H.Schindelin, D.P.Raleigh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.57
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	53.517, 53.517, 36.178, 90.00, 90.00, 90.00
R / Rfree (%)	15.9 / 20.8

The structure of Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA also contains other interesting chemical elements:

Zinc

(Zn)

4 atoms

The binding sites of Chlorine atom in the Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA (pdb code 2hvf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA, PDB code: 2hvf:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in the Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl201 b:32.1 occ:1.00 ZN A:ZN104 2.2 31.3 1.0 NZ A:LYS19 3.2 25.0 1.0 OE2 A:GLU17 3.3 17.4 1.0 O A:HOH464 3.7 21.7 1.0 OE1 A:GLU17 3.7 18.3 1.0 CA A:GLY13 3.8 15.8 1.0 CD A:GLU17 3.9 14.7 1.0 CG A:LYS14 3.9 16.0 1.0 C A:GLY13 4.1 14.3 1.0 N A:LYS14 4.1 13.5 1.0 N A:GLY13 4.2 15.8 1.0 CD A:LYS14 4.2 17.2 1.0 O A:LYS12 4.5 19.5 1.0 CE A:LYS19 4.5 24.5 1.0 C A:LYS12 4.5 19.0 1.0 CB A:LYS14 4.6 14.1 1.0 CE A:LYS14 4.7 20.2 1.0 O A:GLY13 4.8 13.9 1.0 CA A:LYS14 5.0 13.6 1.0

Chlorine binding site 2 out of 5 in the Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl202 b:35.2 occ:1.00 ZN A:ZN102 2.1 18.3 1.0 O A:HOH427 2.8 30.5 1.0 O A:HOH411 3.2 13.7 1.0 OD2 A:ASP23 3.3 18.1 1.0 CB A:MET1 3.7 19.3 1.0 CG A:ASP23 3.8 12.1 1.0 OD1 A:ASP23 3.8 14.3 1.0 CE A:MET1 4.0 25.4 1.0 O A:HOH432 4.2 31.2 1.0 CA A:MET1 4.4 17.0 1.0 O A:HOH460 4.4 35.2 1.0 SD A:MET1 4.7 26.1 1.0 N A:MET1 4.7 14.7 1.0 CG A:MET1 4.8 20.5 1.0 CB A:ASP23 4.9 10.8 1.0

Chlorine binding site 3 out of 5 in the Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl203 b:21.8 occ:1.00 ZN A:ZN101 2.2 19.4 1.0 CL A:CL204 3.2 16.1 0.5 O A:HOH447 3.2 30.1 1.0 CD A:LYS14 3.4 17.2 1.0 OD2 A:ASP8 3.5 17.0 1.0 CE A:LYS14 3.6 20.2 1.0 OD1 A:ASP8 3.6 14.1 1.0 CG A:LYS14 3.7 16.0 1.0 CB A:LYS14 3.8 14.1 1.0 CG A:ASP8 4.0 14.1 1.0 CL A:CL204 4.0 20.5 0.5 O A:HOH461 4.2 44.1 1.0 NZ A:LYS14 4.3 23.7 1.0 CA A:LYS14 4.8 13.6 1.0

Chlorine binding site 4 out of 5 in the Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl204 b:16.1 occ:0.50 CL A:CL204 0.0 16.1 0.5 CL A:CL204 1.2 20.5 0.5 ZN A:ZN101 2.1 19.4 1.0 CL A:CL203 3.2 21.8 1.0 OD2 A:ASP8 3.3 17.0 1.0 O A:HOH447 3.5 30.1 1.0 CG A:ASP8 4.4 14.1 1.0 CE A:LYS14 4.6 20.2 1.0 OD1 A:ASP8 5.0 14.1 1.0

Chlorine binding site 5 out of 5 in the Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl204 b:20.5 occ:0.50 CL A:CL204 0.0 20.5 0.5 CL A:CL204 1.2 16.1 0.5 ZN A:ZN101 2.4 19.4 1.0 OD2 A:ASP8 3.3 17.0 1.0 O A:HOH447 3.3 30.1 1.0 CL A:CL203 4.0 21.8 1.0 CG A:ASP8 4.5 14.1 1.0

B.Anil, E.Y.Kim, J.H.Cho, H.Schindelin, D.P.Raleigh. Detecting and Quantifying Strain in Protein Folding To Be Published.