Atomistry » Chlorine » PDB 2hr2-2i5x » 2hvf
Atomistry »
  Chlorine »
    PDB 2hr2-2i5x »
      2hvf »

Chlorine in PDB 2hvf: Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA

Protein crystallography data

The structure of Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA, PDB code: 2hvf was solved by B.Anil, E.Y.Kim, J.H.Cho, H.Schindelin, D.P.Raleigh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.57
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 53.517, 53.517, 36.178, 90.00, 90.00, 90.00
R / Rfree (%) 15.9 / 20.8

Other elements in 2hvf:

The structure of Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA (pdb code 2hvf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA, PDB code: 2hvf:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 2hvf

Go back to Chlorine Binding Sites List in 2hvf
Chlorine binding site 1 out of 5 in the Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:32.1
occ:1.00
ZN A:ZN104 2.2 31.3 1.0
NZ A:LYS19 3.2 25.0 1.0
OE2 A:GLU17 3.3 17.4 1.0
O A:HOH464 3.7 21.7 1.0
OE1 A:GLU17 3.7 18.3 1.0
CA A:GLY13 3.8 15.8 1.0
CD A:GLU17 3.9 14.7 1.0
CG A:LYS14 3.9 16.0 1.0
C A:GLY13 4.1 14.3 1.0
N A:LYS14 4.1 13.5 1.0
N A:GLY13 4.2 15.8 1.0
CD A:LYS14 4.2 17.2 1.0
O A:LYS12 4.5 19.5 1.0
CE A:LYS19 4.5 24.5 1.0
C A:LYS12 4.5 19.0 1.0
CB A:LYS14 4.6 14.1 1.0
CE A:LYS14 4.7 20.2 1.0
O A:GLY13 4.8 13.9 1.0
CA A:LYS14 5.0 13.6 1.0

Chlorine binding site 2 out of 5 in 2hvf

Go back to Chlorine Binding Sites List in 2hvf
Chlorine binding site 2 out of 5 in the Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:35.2
occ:1.00
ZN A:ZN102 2.1 18.3 1.0
O A:HOH427 2.8 30.5 1.0
O A:HOH411 3.2 13.7 1.0
OD2 A:ASP23 3.3 18.1 1.0
CB A:MET1 3.7 19.3 1.0
CG A:ASP23 3.8 12.1 1.0
OD1 A:ASP23 3.8 14.3 1.0
CE A:MET1 4.0 25.4 1.0
O A:HOH432 4.2 31.2 1.0
CA A:MET1 4.4 17.0 1.0
O A:HOH460 4.4 35.2 1.0
SD A:MET1 4.7 26.1 1.0
N A:MET1 4.7 14.7 1.0
CG A:MET1 4.8 20.5 1.0
CB A:ASP23 4.9 10.8 1.0

Chlorine binding site 3 out of 5 in 2hvf

Go back to Chlorine Binding Sites List in 2hvf
Chlorine binding site 3 out of 5 in the Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:21.8
occ:1.00
ZN A:ZN101 2.2 19.4 1.0
CL A:CL204 3.2 16.1 0.5
O A:HOH447 3.2 30.1 1.0
CD A:LYS14 3.4 17.2 1.0
OD2 A:ASP8 3.5 17.0 1.0
CE A:LYS14 3.6 20.2 1.0
OD1 A:ASP8 3.6 14.1 1.0
CG A:LYS14 3.7 16.0 1.0
CB A:LYS14 3.8 14.1 1.0
CG A:ASP8 4.0 14.1 1.0
CL A:CL204 4.0 20.5 0.5
O A:HOH461 4.2 44.1 1.0
NZ A:LYS14 4.3 23.7 1.0
CA A:LYS14 4.8 13.6 1.0

Chlorine binding site 4 out of 5 in 2hvf

Go back to Chlorine Binding Sites List in 2hvf
Chlorine binding site 4 out of 5 in the Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:16.1
occ:0.50
CL A:CL204 0.0 16.1 0.5
CL A:CL204 1.2 20.5 0.5
ZN A:ZN101 2.1 19.4 1.0
CL A:CL203 3.2 21.8 1.0
OD2 A:ASP8 3.3 17.0 1.0
O A:HOH447 3.5 30.1 1.0
CG A:ASP8 4.4 14.1 1.0
CE A:LYS14 4.6 20.2 1.0
OD1 A:ASP8 5.0 14.1 1.0

Chlorine binding site 5 out of 5 in 2hvf

Go back to Chlorine Binding Sites List in 2hvf
Chlorine binding site 5 out of 5 in the Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of N-Terminal Domain of Ribosomal Protein L9 (NTL9), G34DA within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:20.5
occ:0.50
CL A:CL204 0.0 20.5 0.5
CL A:CL204 1.2 16.1 0.5
ZN A:ZN101 2.4 19.4 1.0
OD2 A:ASP8 3.3 17.0 1.0
O A:HOH447 3.3 30.1 1.0
CL A:CL203 4.0 21.8 1.0
CG A:ASP8 4.5 14.1 1.0

Reference:

B.Anil, E.Y.Kim, J.H.Cho, H.Schindelin, D.P.Raleigh. Detecting and Quantifying Strain in Protein Folding To Be Published.
Page generated: Sat Dec 12 09:07:48 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy