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Chlorine in PDB 2i24: Crystal Structure Analysis of the Nurse Shark New Antigen Receptor PBLA8 Variable Domain

Protein crystallography data

The structure of Crystal Structure Analysis of the Nurse Shark New Antigen Receptor PBLA8 Variable Domain, PDB code: 2i24 was solved by R.L.Stanfield, I.A.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.70 / 1.35
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 53.958, 53.958, 79.077, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 21.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure Analysis of the Nurse Shark New Antigen Receptor PBLA8 Variable Domain (pdb code 2i24). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure Analysis of the Nurse Shark New Antigen Receptor PBLA8 Variable Domain, PDB code: 2i24:

Chlorine binding site 1 out of 1 in 2i24

Go back to Chlorine Binding Sites List in 2i24
Chlorine binding site 1 out of 1 in the Crystal Structure Analysis of the Nurse Shark New Antigen Receptor PBLA8 Variable Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure Analysis of the Nurse Shark New Antigen Receptor PBLA8 Variable Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Cl201

b:13.0
occ:1.00
N N:TYR89 3.2 17.3 1.0
N N:VAL30 3.2 20.8 1.0
CB N:TYR89 3.6 18.2 1.0
CB N:CYS96 3.7 23.6 1.0
CA N:TYR89 3.7 17.6 1.0
CB N:SER87 3.7 21.5 1.0
O N:VAL30 3.8 20.2 1.0
CA N:CYS29 3.9 21.5 1.0
N N:ARG88 3.9 18.1 1.0
C N:TYR89 3.9 18.3 1.0
SG N:CYS96 3.9 26.1 1.0
CB N:VAL30 4.0 19.6 1.0
CB N:CYS29 4.0 22.5 1.0
C N:CYS29 4.0 22.0 1.0
CA N:VAL30 4.1 19.8 1.0
CD2 N:TYR89 4.1 19.8 1.0
N N:GLY90 4.2 19.0 1.0
OG N:SER87 4.2 23.6 1.0
C N:ARG88 4.3 16.8 1.0
CG N:TYR89 4.3 17.0 1.0
CG2 N:VAL30 4.4 21.6 1.0
C N:VAL30 4.4 19.5 1.0
O N:TYR89 4.4 17.4 1.0
CA N:ARG88 4.5 16.8 1.0
C N:SER87 4.5 18.1 1.0
CA N:SER87 4.5 19.6 1.0
CB N:ARG88 4.7 17.3 1.0
SG N:CYS29 4.8 26.1 1.0

Reference:

R.L.Stanfield, H.Dooley, P.Verdino, M.F.Flajnik, I.A.Wilson. Maturation of Shark Single-Domain (Ignar) Antibodies: Evidence For Induced-Fit Binding J.Mol.Biol. V. 367 358 2007.
ISSN: ISSN 0022-2836
PubMed: 17258766
DOI: 10.1016/J.JMB.2006.12.045
Page generated: Sat Jul 20 08:02:12 2024

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