Atomistry » Chlorine » PDB 2i6f-2ihw » 2ibu
Atomistry »
  Chlorine »
    PDB 2i6f-2ihw »
      2ibu »

Chlorine in PDB 2ibu: Crystallographic and Kinetic Studies of Human Mitochondrial Acetoacetyl-Coa Thiolase (T2): the Importance of Potassium and Chloride For Its Structure and Function

Enzymatic activity of Crystallographic and Kinetic Studies of Human Mitochondrial Acetoacetyl-Coa Thiolase (T2): the Importance of Potassium and Chloride For Its Structure and Function

All present enzymatic activity of Crystallographic and Kinetic Studies of Human Mitochondrial Acetoacetyl-Coa Thiolase (T2): the Importance of Potassium and Chloride For Its Structure and Function:
2.3.1.9;

Protein crystallography data

The structure of Crystallographic and Kinetic Studies of Human Mitochondrial Acetoacetyl-Coa Thiolase (T2): the Importance of Potassium and Chloride For Its Structure and Function, PDB code: 2ibu was solved by A.M.Haapalainen, R.K.Wierenga, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.46 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 75.249, 106.569, 101.497, 90.00, 102.90, 90.00
R / Rfree (%) 16.6 / 19.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystallographic and Kinetic Studies of Human Mitochondrial Acetoacetyl-Coa Thiolase (T2): the Importance of Potassium and Chloride For Its Structure and Function (pdb code 2ibu). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystallographic and Kinetic Studies of Human Mitochondrial Acetoacetyl-Coa Thiolase (T2): the Importance of Potassium and Chloride For Its Structure and Function, PDB code: 2ibu:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 2ibu

Go back to Chlorine Binding Sites List in 2ibu
Chlorine binding site 1 out of 4 in the Crystallographic and Kinetic Studies of Human Mitochondrial Acetoacetyl-Coa Thiolase (T2): the Importance of Potassium and Chloride For Its Structure and Function


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystallographic and Kinetic Studies of Human Mitochondrial Acetoacetyl-Coa Thiolase (T2): the Importance of Potassium and Chloride For Its Structure and Function within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl2001

b:14.4
occ:1.00
 O A:HOH6020 3.1 10.7 1.0
O A:HOH6003 3.1 9.8 1.0
N B:CYS119 3.3 9.8 1.0
ND2 A:ASN414 3.5 12.5 1.0
CA A:GLY418 3.7 10.0 1.0
CA B:PRO118 3.9 13.0 1.0
O B:CYS119 3.9 10.8 1.0
CE A:LYS124 4.0 11.2 1.0
C B:PRO118 4.1 12.6 1.0
N A:GLY418 4.1 11.3 1.0
CD B:ARG105 4.2 12.5 1.0
O B:HOH6018 4.2 12.7 1.0
CA B:CYS119 4.2 11.4 1.0
NZ A:LYS124 4.2 9.5 1.0
CB B:CYS119 4.2 10.8 1.0
OD1 A:ASN414 4.4 12.9 1.0
CG A:ASN414 4.4 13.2 1.0
NE B:ARG105 4.4 12.8 1.0
O B:THR117 4.4 12.3 1.0
C B:CYS119 4.5 11.0 1.0
CB A:ALA319 4.5 14.1 1.0
CB B:PRO118 4.6 13.9 1.0
CZ B:ARG105 4.7 13.4 1.0
CG A:LYS124 4.8 10.0 1.0
NH1 B:ARG105 4.8 13.7 1.0
C A:GLY418 4.9 9.2 1.0
N B:PRO118 5.0 14.7 1.0
SG B:CYS119 5.0 11.7 1.0

Chlorine binding site 2 out of 4 in 2ibu

Go back to Chlorine Binding Sites List in 2ibu
Chlorine binding site 2 out of 4 in the Crystallographic and Kinetic Studies of Human Mitochondrial Acetoacetyl-Coa Thiolase (T2): the Importance of Potassium and Chloride For Its Structure and Function


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystallographic and Kinetic Studies of Human Mitochondrial Acetoacetyl-Coa Thiolase (T2): the Importance of Potassium and Chloride For Its Structure and Function within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl2002

b:14.2
occ:1.00
 O B:HOH6044 3.1 13.7 1.0
O B:HOH6025 3.2 13.2 1.0
N A:CYS119 3.4 10.6 1.0
ND2 B:ASN414 3.5 14.7 1.0
CA B:GLY418 3.8 15.9 1.0
O A:CYS119 3.8 12.4 1.0
CE B:LYS124 3.9 11.1 1.0
CA A:PRO118 3.9 12.7 1.0
NZ B:LYS124 4.0 11.6 1.0
C A:PRO118 4.1 12.8 1.0
O A:HOH6029 4.2 15.3 1.0
CD A:ARG105 4.2 13.6 1.0
N B:GLY418 4.3 15.1 1.0
CA A:CYS119 4.3 10.5 1.0
CB A:CYS119 4.3 11.2 1.0
OD1 B:ASN414 4.4 15.2 1.0
CG B:ASN414 4.4 14.4 1.0
O A:THR117 4.5 13.5 1.0
NE A:ARG105 4.5 13.9 1.0
C A:CYS119 4.5 10.3 1.0
CB B:ALA319 4.6 14.5 1.0
CB A:PRO118 4.6 13.3 1.0
CG B:LYS124 4.7 8.9 1.0
CZ A:ARG105 4.8 14.1 1.0
NH1 A:ARG105 4.8 13.0 1.0
CD B:LYS124 4.9 10.3 1.0
SG A:CYS119 5.0 12.9 1.0
C B:GLY418 5.0 13.2 1.0
N A:PRO118 5.0 13.9 1.0

Chlorine binding site 3 out of 4 in 2ibu

Go back to Chlorine Binding Sites List in 2ibu
Chlorine binding site 3 out of 4 in the Crystallographic and Kinetic Studies of Human Mitochondrial Acetoacetyl-Coa Thiolase (T2): the Importance of Potassium and Chloride For Its Structure and Function


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystallographic and Kinetic Studies of Human Mitochondrial Acetoacetyl-Coa Thiolase (T2): the Importance of Potassium and Chloride For Its Structure and Function within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl2004

b:25.2
occ:1.00
 O D:HOH6042 3.0 27.3 1.0
O D:HOH6013 3.0 23.0 1.0
N C:CYS119 3.4 22.9 1.0
ND2 D:ASN414 3.6 22.5 1.0
CA D:GLY418 3.8 25.4 1.0
CA C:PRO118 3.9 24.4 1.0
O C:CYS119 4.0 22.3 1.0
CE D:LYS124 4.0 19.1 1.0
O C:HOH6033 4.1 21.5 1.0
CD C:ARG105 4.1 22.0 1.0
C C:PRO118 4.1 24.0 1.0
N D:GLY418 4.2 26.3 1.0
NZ D:LYS124 4.2 19.4 1.0
CA C:CYS119 4.3 23.4 1.0
CB C:CYS119 4.4 24.3 1.0
O C:THR117 4.4 28.0 1.0
NE C:ARG105 4.4 23.6 1.0
CG D:ASN414 4.5 24.2 1.0
CB D:ALA319 4.5 24.1 1.0
OD1 D:ASN414 4.5 26.0 1.0
CB C:PRO118 4.6 24.1 1.0
C C:CYS119 4.6 22.8 1.0
CZ C:ARG105 4.7 24.5 1.0
NH1 C:ARG105 4.7 23.0 1.0
CG D:LYS124 4.8 20.4 1.0
N C:PRO118 4.9 24.8 1.0
C D:GLY418 4.9 25.2 1.0
SG C:CYS119 5.0 25.3 1.0
C D:GLY417 5.0 27.3 1.0

Chlorine binding site 4 out of 4 in 2ibu

Go back to Chlorine Binding Sites List in 2ibu
Chlorine binding site 4 out of 4 in the Crystallographic and Kinetic Studies of Human Mitochondrial Acetoacetyl-Coa Thiolase (T2): the Importance of Potassium and Chloride For Its Structure and Function


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystallographic and Kinetic Studies of Human Mitochondrial Acetoacetyl-Coa Thiolase (T2): the Importance of Potassium and Chloride For Its Structure and Function within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl2003

b:23.2
occ:1.00
 O C:HOH6011 3.1 20.3 1.0
O C:HOH6030 3.2 19.8 1.0
N D:CYS119 3.3 21.7 1.0
ND2 C:ASN414 3.6 19.9 1.0
CA D:PRO118 3.8 22.2 1.0
CA C:GLY418 3.8 23.7 1.0
O D:CYS119 3.9 20.9 1.0
C D:PRO118 4.0 21.8 1.0
CE C:LYS124 4.1 21.7 1.0
CD D:ARG105 4.2 19.2 1.0
O D:HOH6005 4.2 20.6 1.0
NZ C:LYS124 4.2 19.3 1.0
CA D:CYS119 4.2 20.6 1.0
N C:GLY418 4.3 23.0 1.0
CB D:CYS119 4.3 21.6 1.0
OD1 C:ASN414 4.4 22.2 1.0
O D:THR117 4.4 25.9 1.0
CG C:ASN414 4.4 22.9 1.0
NE D:ARG105 4.5 22.1 1.0
C D:CYS119 4.5 21.5 1.0
CB C:ALA319 4.5 25.1 1.0
CB D:PRO118 4.6 22.9 1.0
CG C:LYS124 4.7 19.0 1.0
CZ D:ARG105 4.8 22.8 1.0
NH1 D:ARG105 4.8 23.4 1.0
N D:PRO118 4.8 23.8 1.0
C C:GLY418 4.9 23.6 1.0
SG D:CYS119 5.0 21.6 1.0

Reference:

A.M.Haapalainen, G.Merilainen, P.L.Pirila, N.Kondo, T.Fukao, R.K.Wierenga. Crystallographic and Kinetic Studies of Human Mitochondrial Acetoacetyl-Coa Thiolase: the Importance of Potassium and Chloride Ions For Its Structure and Function Biochemistry V. 46 4305 2007.
ISSN: ISSN 0006-2960
PubMed: 17371050
DOI: 10.1021/BI6026192
Page generated: Sat Jul 20 08:07:45 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy